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BaseInfo

ncRNA ID	novel_zma_miR5224
Species	Zea mays
Class	miRNA
Genome position	Chr4:37576098-37576153 [-]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	33 - UGGGAUUGAGUGUGAGGUAUGGAU - 56
Stem-loop(if miRNA)	--       G   G  A   A      C   UGGGAUU AGU UG GGU UGGAUU A   ||||||| ||| || ||| |||||| C   ACCUUAA UUA GC CCA ACCUAA C GU       A   G  -   G      C
Stem-loop sequence	UGGGAUUGAGUGUGAGGUAUGGAUUCACCCAAUCCAGACCCGGAUUAAAUUCCAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166273.1	ncRNA:24   UAGGUAUGGAGUGUGAGUUAGGGU   1   |||||||||||||||*|||||||| targets:34   AUCCAUACCUCACACCCAAUCCCA   57 Target Full Sequence	1.5	Sequence 3937 from Patent EP2559767	NA	coding protein	psRNATarget
HI405812.1	ncRNA:24   UAGGUAUGGAGUGUGAGUUAGGGU   1   |||||||||||||||*|||||||| targets:34   AUCCAUACCUCACACCCAAUCCCA   57 Target Full Sequence	1.5	Sequence 3937 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237942.1	ncRNA:24   UAGGUAUGGAGUGUGAGUUAGGGU   1   |||||||||||||||*|||||||| targets:34   AUCCAUACCUCACACCCAAUCCCA   57 Target Full Sequence	1.5	Sequence 3937 from Patent EP2985353	NA	coding protein	psRNATarget
HI409566.1	ncRNA:24   UAGGUAUGGAGUGUGAGUUAGGGU   1   |||||||=|||||||*|||||||| targets:34   AUCCAUAUCUCACACCCAAUCCCA   57 Target Full Sequence	2.5	Sequence 7691 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241696.1	ncRNA:24   UAGGUAUGGAGUGUGAGUUAGGGU   1   |||||||=|||||||*|||||||| targets:34   AUCCAUAUCUCACACCCAAUCCCA   57 Target Full Sequence	2.5	Sequence 7691 from Patent EP2985353	NA	coding protein	psRNATarget
JB170027.1	ncRNA:24   UAGGUAUGGAGUGUGAGUUAGGGU   1   |||||||=|||||||*|||||||| targets:34   AUCCAUAUCUCACACCCAAUCCCA   57 Target Full Sequence	2.5	Sequence 7691 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020539268.1	ncRNA:24   UAGG---UAUGGAGUGUGAGUUAGGGU   1   |*||---|||=||*||||||||||||* targets:704   AACCUAAAUAUCUAACACUCAAUCCCC   730 Target Full Sequence	3.0	PREDICTED: Zea mays cysteine-rich receptor-like protein kinase 10 (LOC103629456), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539267.1	ncRNA:24   UAGG---UAUGGAGUGUGAGUUAGGGU   1   |*||---|||=||*||||||||||||* targets:698   AACCUAAAUAUCUAACACUCAAUCCCC   724 Target Full Sequence	3.0	PREDICTED: Zea mays cysteine-rich receptor-like protein kinase 10 (LOC103629456), transcript variant X1, mRNA	NA	coding protein	psRNATarget