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BaseInfo

ncRNA ID novel_zma_miR5222
Species Zea mays
Class miRNA
Genome position Chr4:77039694-77039900 [-]
Reference genome RefGen_v4
Source SRR2287165
Length 24
Mature sequence(if miRNA) 184 - UUGUAUUGAGGUGGAUUGGGGUGU - 207
Stem-loop(if miRNA) --U   A                     U   AAC   U        C            C   U                          C     A AG  
   UGU UUGAGGUGGAUUGGGGUGUAA UUA   UAA UUACACCC AAUCCACCUCAA ACA GUGGAUUGAGGUCAAUACUAGAGUAC CAAAC A  CCU
   ||| ||||||||||||||||||||| |||   ||| |||||||| |||||||||||| ||| |||||||||||||||||||||||||| ||||| |  ||U
   ACA AACUCCACCUAACCCCACAUU AAU   AUU AAUGUGGG UUAGGUGGAGUU UGU CACCUAACUCUAGUUAUGAUCUCAUG GUUUG U  GGA
UGU   C                     U   CAA   C        A            A   U                          A     A CU  
Stem-loop sequence UUGUAUUGAGGUGGAUUGGGGUGUAAUUUAAACUAAUUUACACCCCAAUCCACCUCAACACAUGUGGAUUGAGGUCAAUACUAGAGUACCCAAACAAAGCCUUAGGUCUAGUUUGAGUACUCUAGUAUUGAUCUCAAUCCACUUGUAUUGAGGUGGAUUAGGGUGUAACUUAAACUAAUUUACACCCCAAUCCACCUCAACACAUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB163780.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||=|||||||||||||
targets:62   ACACCCCAAUUCACCUCAAUACAA   85

1.0 Sequence 1444 from Patent EP2559767 NA coding protein psRNATarget
LQ235449.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||=|||||||||||||
targets:62   ACACCCCAAUUCACCUCAAUACAA   85

1.0 Sequence 1444 from Patent EP2985353 NA coding protein psRNATarget
HI403319.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||=|||||||||||||
targets:62   ACACCCCAAUUCACCUCAAUACAA   85

1.0 Sequence 1444 from Patent EP2074227 NA coding protein psRNATarget
JB163527.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||||||||||||||||||||||*
targets:61   ACACCCCAAUCCACCUCAAUACAU   84

1.0 Sequence 1191 from Patent EP2559767 NA coding protein psRNATarget
LQ235196.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||||||||||||||||||||||*
targets:61   ACACCCCAAUCCACCUCAAUACAU   84

1.0 Sequence 1191 from Patent EP2985353 NA coding protein psRNATarget
HI403066.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||||||||||||||||||||||*
targets:61   ACACCCCAAUCCACCUCAAUACAU   84

1.0 Sequence 1191 from Patent EP2074227 NA coding protein psRNATarget
LQ235126.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||||||||||||=|||||||||*
targets:58   ACACCCCAAUCCAUCUCAAUACAU   81

2.5 Sequence 1121 from Patent EP2985353 NA coding protein psRNATarget
HI402996.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||||||||||||=|||||||||*
targets:58   ACACCCCAAUCCAUCUCAAUACAU   81

2.5 Sequence 1121 from Patent EP2074227 NA coding protein psRNATarget
JB163457.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||||||||||||=|||||||||*
targets:58   ACACCCCAAUCCAUCUCAAUACAU   81

2.5 Sequence 1121 from Patent EP2559767 NA coding protein psRNATarget
JB163411.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||=||||||||||||||||*
targets:60   ACACCCUAAUCCACCUCAAUACAU   83

2.0 Sequence 1075 from Patent EP2559767 NA coding protein psRNATarget
LQ235080.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||=||||||||||||||||*
targets:60   ACACCCUAAUCCACCUCAAUACAU   83

2.0 Sequence 1075 from Patent EP2985353 NA coding protein psRNATarget
HI402950.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||=||||||||||||||||*
targets:60   ACACCCUAAUCCACCUCAAUACAU   83

2.0 Sequence 1075 from Patent EP2074227 NA coding protein psRNATarget
LQ235451.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||||||=||||||||*
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

2.5 Sequence 1446 from Patent EP2985353 NA coding protein psRNATarget
HI403320.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||||||=||||||||*
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

2.5 Sequence 1445 from Patent EP2074227 NA coding protein psRNATarget
LQ235491.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||||||||=||||||*
targets:62   ACACCCCAAUCCACCUUAAUACAU   85

2.5 Sequence 1486 from Patent EP2985353 NA coding protein psRNATarget
JB163822.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||||||||=||||||*
targets:62   ACACCCCAAUCCACCUUAAUACAU   85

2.5 Sequence 1486 from Patent EP2559767 NA coding protein psRNATarget
JB163782.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||||||=||||||||*
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

2.5 Sequence 1446 from Patent EP2559767 NA coding protein psRNATarget
JB163781.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||||||=||||||||*
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

2.5 Sequence 1445 from Patent EP2559767 NA coding protein psRNATarget
EZ069719.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||=||||||||||||||||*
targets:53   ACACCCUAAUCCACCUCAAUACAU   76

2.0 TSA: Zea mays contig05355, mRNA sequence NA coding protein psRNATarget
LQ235450.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||||||=||||||||*
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

2.5 Sequence 1445 from Patent EP2985353 NA coding protein psRNATarget
HI403321.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||||||=||||||||*
targets:62   ACACCCCAAUCCACUUCAAUACAU   85

2.5 Sequence 1446 from Patent EP2074227 NA coding protein psRNATarget
HI403361.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||||||||=||||||*
targets:62   ACACCCCAAUCCACCUUAAUACAU   85

2.5 Sequence 1486 from Patent EP2074227 NA coding protein psRNATarget
EU941642.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||||=|||||||||||||||||*
targets:10   ACACCUCAAUCCACCUCAAUACAU   33

2.0 Zea mays clone 1468727 mRNA sequence NA coding protein psRNATarget
AY110566.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||||||||=||||||*
targets:295   ACACCCCAAUCCACCUUAAUACAU   318

2.5 Zea mays CL45690_1 mRNA sequence NA coding protein psRNATarget
BT085755.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||||=|||||||||||||||||*
targets:883   ACACCUCAAUCCACCUCAAUACAU   906

2.0 Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds NA coding protein psRNATarget
NM_001156128.2
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||||=|||||||||||||||||*
targets:883   ACACCUCAAUCCACCUCAAUACAU   906

2.0 Zea mays protein SFT2 (LOC100283226), mRNA NA coding protein psRNATarget
LQ235147.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |=||||||||||=||||||||||*
targets:61   AUACCCCAAUCCGCCUCAAUACAU   84

2.5 Sequence 1142 from Patent EP2985353 NA coding protein psRNATarget
HI403017.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |=||||||||||=||||||||||*
targets:61   AUACCCCAAUCCGCCUCAAUACAU   84

2.5 Sequence 1142 from Patent EP2074227 NA coding protein psRNATarget
JB163478.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |=||||||||||=||||||||||*
targets:61   AUACCCCAAUCCGCCUCAAUACAU   84

2.5 Sequence 1142 from Patent EP2559767 NA coding protein psRNATarget
LQ235622.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||=|=||||||||||||||||*
targets:76   ACACUCUAAUCCACCUCAAUACAU   99

2.0 Sequence 1617 from Patent EP2985353 NA coding protein psRNATarget
JB163953.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||=|=||||||||||||||||*
targets:76   ACACUCUAAUCCACCUCAAUACAU   99

2.0 Sequence 1617 from Patent EP2559767 NA coding protein psRNATarget
HI403492.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||=|=||||||||||||||||*
targets:76   ACACUCUAAUCCACCUCAAUACAU   99

2.0 Sequence 1617 from Patent EP2074227 NA coding protein psRNATarget
LQ235205.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||||||*||||||||*
targets:61   ACACCCCAAUCCACAUCAAUACAU   84

2.5 Sequence 1200 from Patent EP2985353 NA coding protein psRNATarget
JB163536.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||||||*||||||||*
targets:61   ACACCCCAAUCCACAUCAAUACAU   84

2.5 Sequence 1200 from Patent EP2559767 NA coding protein psRNATarget
HI403075.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||||||*||||||||*
targets:61   ACACCCCAAUCCACAUCAAUACAU   84

2.5 Sequence 1200 from Patent EP2074227 NA coding protein psRNATarget
LQ235506.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||||||*||||||||*
targets:62   ACACCCCAAUCCACAUCAAUACAU   85

2.5 Sequence 1501 from Patent EP2985353 NA coding protein psRNATarget
HI403376.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||||||*||||||||*
targets:62   ACACCCCAAUCCACAUCAAUACAU   85

2.5 Sequence 1501 from Patent EP2074227 NA coding protein psRNATarget
JB163837.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||||||||||||*||||||||*
targets:62   ACACCCCAAUCCACAUCAAUACAU   85

2.5 Sequence 1501 from Patent EP2559767 NA coding protein psRNATarget
HI403009.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||=|=|||=||||||||||||*
targets:88   ACACUCUAAUUCACCUCAAUACAU   111

3.0 Sequence 1134 from Patent EP2074227 NA coding protein psRNATarget
LQ235139.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||=|=|||=||||||||||||*
targets:88   ACACUCUAAUUCACCUCAAUACAU   111

3.0 Sequence 1134 from Patent EP2985353 NA coding protein psRNATarget
JB163470.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||=|=|||=||||||||||||*
targets:88   ACACUCUAAUUCACCUCAAUACAU   111

3.0 Sequence 1134 from Patent EP2559767 NA coding protein psRNATarget
HI407232.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  **|||==|||||||||||||||||
targets:23   UAACCUUAAUCCACCUCAAUACAA   46

2.0 Sequence 5357 from Patent EP2074227 NA coding protein psRNATarget
LQ239362.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  **|||==|||||||||||||||||
targets:23   UAACCUUAAUCCACCUCAAUACAA   46

2.0 Sequence 5357 from Patent EP2985353 NA coding protein psRNATarget
JB167693.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  **|||==|||||||||||||||||
targets:23   UAACCUUAAUCCACCUCAAUACAA   46

2.0 Sequence 5357 from Patent EP2559767 NA coding protein psRNATarget
EU963469.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  **|||==|||||||||||||||||
targets:973   UAACCUUAAUCCACCUCAAUACAA   996

2.0 Zea mays clone 263014 mRNA sequence NA coding protein psRNATarget
LQ235096.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||||*=||||||||||||||||*
targets:60   ACACCAUAAUCCACCUCAAUACAU   83

3.0 Sequence 1091 from Patent EP2985353 NA coding protein psRNATarget
HI402966.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||||*=||||||||||||||||*
targets:60   ACACCAUAAUCCACCUCAAUACAU   83

3.0 Sequence 1091 from Patent EP2074227 NA coding protein psRNATarget
JB163427.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||||*=||||||||||||||||*
targets:60   ACACCAUAAUCCACCUCAAUACAU   83

3.0 Sequence 1091 from Patent EP2559767 NA coding protein psRNATarget
HI403263.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||=|||||||||||||||*|||*
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.5 Sequence 1388 from Patent EP2074227 NA coding protein psRNATarget
LQ235392.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||=|||||||||||||||*|||*
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.5 Sequence 1387 from Patent EP2985353 NA coding protein psRNATarget
JB163723.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||=|||||||||||||||*|||*
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.5 Sequence 1387 from Patent EP2559767 NA coding protein psRNATarget
LQ235393.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||=|||||||||||||||*|||*
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.5 Sequence 1388 from Patent EP2985353 NA coding protein psRNATarget
JB163724.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||=|||||||||||||||*|||*
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.5 Sequence 1388 from Patent EP2559767 NA coding protein psRNATarget
HI403262.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |||=|||||||||||||||*|||*
targets:62   ACAUCCCAAUCCACCUCAACACAU   85

2.5 Sequence 1387 from Patent EP2074227 NA coding protein psRNATarget
XM_020550625.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||=||||*|||||||||||||*
targets:2942   ACACUCCAAACCACCUCAAUACAC   2965

2.0 PREDICTED: Zea mays cation/H(+) antiporter 15-like (LOC109944899), mRNA NA coding protein psRNATarget
XM_008677341.2
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  ||||=||||*|||||||||||||*
targets:2958   ACACUCCAAACCACCUCAAUACAC   2981

2.0 PREDICTED: Zea mays cation/H(+) antiporter 15 (LOC103651657), mRNA NA coding protein psRNATarget
JB167199.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  **|=|||||||||||||||||||*
targets:64   UGAUCCCAAUCCACCUCAAUACAU   87

1.0 Sequence 4863 from Patent EP2559767 NA coding protein psRNATarget
LQ238868.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  **|=|||||||||||||||||||*
targets:64   UGAUCCCAAUCCACCUCAAUACAU   87

1.0 Sequence 4863 from Patent EP2985353 NA coding protein psRNATarget
HI406738.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  **|=|||||||||||||||||||*
targets:64   UGAUCCCAAUCCACCUCAAUACAU   87

1.0 Sequence 4863 from Patent EP2074227 NA coding protein psRNATarget
EU963895.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  **|=|||||||||||||||||||*
targets:980   UGAUCCCAAUCCACCUCAAUACAU   1003

1.0 Zea mays clone 273839 protein SFT2 mRNA, complete cds NA coding protein psRNATarget
BT085111.1
ncRNA:24   UGUGGGGUUAGGUGGAGUUAUGUU   1
  |*|==||||||||||||||||||*
targets:1191   AAAUUCCAAUCCACCUCAAUACAU   1214

1.0 Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds NA coding protein psRNATarget
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