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BaseInfo

ncRNA ID	novel_zma_miR5210
Species	Zea mays
Class	miRNA
Genome position	Chr4:246044694-246044784 [+]
Reference genome	RefGen_v4
Source	SRR2287165
Length	21
Mature sequence(if miRNA)	71 - AGAAACGGAGGGAGUACUAUA - 91
Stem-loop(if miRNA)	---UA                                        A      UACUCCCUCCGUUUCUUUUUAUUUGUCGCUGGAUAGUGUA A      ||||||||||||||||||||||||||||||||||||||||      AUGAGGGAGGCAAAGAAAAAUAAACAGCGACCUAUCACGU A AUAUC                                        U
Stem-loop sequence	UAUACUCCCUCCGUUUCUUUUUAUUUGUCGCUGGAUAGUGUAAAAUUGCACUAUCCAGCGACAAAUAAAAAGAAACGGAGGGAGUACUAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008664463.2	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   ||||||||||||||=|||||| targets:88   UAUAGUACUCCCUCUGUUUCU   108 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008664460.2	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   ||||||||||||||=|||||| targets:108   UAUAGUACUCCCUCUGUUUCU   128 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103641061), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ517015.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   |||=|||||||||||||||=| targets:51   UAUGGUACUCCCUCCGUUUUU   71 Target Full Sequence	2.5	TSA: Zea mays cultivar W22 CL412Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
BT054612.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   |=|||||||||=||||||||| targets:1359   UGUAGUACUCCUUCCGUUUCU   1379 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0190P19 mRNA, complete cds	NA	coding protein	psRNATarget
HI403279.1	ncRNA:21   AU--AUCAUGAGGGAGGCAAAGA   1   ||--||||||||||||||||||| targets:4   UAAUUAGUACUCCCUCCGUUUCU   26 Target Full Sequence	2.5	Sequence 1404 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235409.1	ncRNA:21   AU--AUCAUGAGGGAGGCAAAGA   1   ||--||||||||||||||||||| targets:4   UAAUUAGUACUCCCUCCGUUUCU   26 Target Full Sequence	2.5	Sequence 1404 from Patent EP2985353	NA	coding protein	psRNATarget
JB163740.1	ncRNA:21   AU--AUCAUGAGGGAGGCAAAGA   1   ||--||||||||||||||||||| targets:4   UAAUUAGUACUCCCUCCGUUUCU   26 Target Full Sequence	2.5	Sequence 1404 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001143050.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   |||||||||||*||||||||| targets:1079   UAUAGUACUCCAUCCGUUUCU   1099 Target Full Sequence	1.5	Zea mays uncharacterized LOC100216637 (LOC100216637), mRNA	NA	coding protein	psRNATarget
BT037092.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   |||||||||||*||||||||| targets:1079   UAUAGUACUCCAUCCGUUUCU   1099 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0154F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542418.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   ||||*|||||||||||||||| targets:1972   UAUACUACUCCCUCCGUUUCU   1992 Target Full Sequence	1.0	PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008658752.2	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   ||||*|||||||||||||||| targets:2039   UAUACUACUCCCUCCGUUUCU   2059 Target Full Sequence	1.0	PREDICTED: Zea mays protein NRT1/ PTR FAMILY 8.1 (LOC103636396), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020544903.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   |||||||||||*||||||||| targets:3136   UAUAGUACUCCAUCCGUUUCU   3156 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544902.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   |||||||||||*||||||||| targets:3145   UAUAGUACUCCAUCCGUUUCU   3165 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100216637 (LOC100216637), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU964901.1	ncRNA:21   AUA--UCAUGAGGGAGGCAAAGA   1   |=|--|||||||||||||||||| targets:490   UGUUAAGUACUCCCUCCGUUUCU   512 Target Full Sequence	2.5	Zea mays clone 282450 mRNA sequence	NA	coding protein	psRNATarget
NM_001151882.1	ncRNA:21   AUA--UCAUGAGGGAGGCAAAGA   1   |=|--|||||||||||||||||| targets:562   UGUUAAGUACUCCCUCCGUUUCU   584 Target Full Sequence	2.5	Zea mays uncharacterized LOC100278686 (LOC100278686), mRNA	NA	coding protein	psRNATarget
EU974849.1	ncRNA:21   AUA--UCAUGAGGGAGGCAAAGA   1   |=|--|||||||||||||||||| targets:562   UGUUAAGUACUCCCUCCGUUUCU   584 Target Full Sequence	2.5	Zea mays clone 459794 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
LQ235531.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   |=||*|||||||||||||||| targets:6   UGUAUUACUCCCUCCGUUUCU   26 Target Full Sequence	1.0	Sequence 1526 from Patent EP2985353	NA	coding protein	psRNATarget
HI403401.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   |=||*|||||||||||||||| targets:6   UGUAUUACUCCCUCCGUUUCU   26 Target Full Sequence	1.0	Sequence 1526 from Patent EP2074227	NA	coding protein	psRNATarget
JB163862.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   |=||*|||||||||||||||| targets:6   UGUAUUACUCCCUCCGUUUCU   26 Target Full Sequence	1.0	Sequence 1526 from Patent EP2559767	NA	coding protein	psRNATarget
BT065536.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   ||*||||||||||||||||=| targets:783   UAAAGUACUCCCUCCGUUUUU   803 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0224G04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156378.2	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   ||*||||||||||||||||=| targets:841   UAAAGUACUCCCUCCGUUUUU   861 Target Full Sequence	2.5	Zea mays ribulose-phosphate 3-epimerase (LOC100283478), mRNA	NA	coding protein	psRNATarget
EU964879.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   ||*||||||||||||||||=| targets:842   UAAAGUACUCCCUCCGUUUUU   862 Target Full Sequence	2.5	Zea mays clone 282287 ribulose-phosphate 3-epimerase mRNA, complete cds	NA	coding protein	psRNATarget
HI407230.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   ||*|||||||||||||||||* targets:1   UAAAGUACUCCCUCCGUUUCG   21 Target Full Sequence	2.0	Sequence 5355 from Patent EP2074227	NA	coding protein	psRNATarget
JB167691.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   ||*|||||||||||||||||* targets:1   UAAAGUACUCCCUCCGUUUCG   21 Target Full Sequence	2.0	Sequence 5355 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239360.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   ||*|||||||||||||||||* targets:1   UAAAGUACUCCCUCCGUUUCG   21 Target Full Sequence	2.0	Sequence 5355 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008671993.2	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   *|||*|||||||||||||||| targets:1161   CAUAUUACUCCCUCCGUUUCU   1181 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008671992.2	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   *|||*|||||||||||||||| targets:1267   CAUAUUACUCCCUCCGUUUCU   1287 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103647454 (LOC103647454), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008656936.2	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   *|*|||||||||||||||||| targets:159   AAAAGUACUCCCUCCGUUUCU   179 Target Full Sequence	1.0	PREDICTED: Zea mays putative HLH DNA-binding domain superfamily protein (LOC100381500), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB169406.1	ncRNA:19   AUCAUGAGGGAGGCAAAGA   1   *|||||||||||||||||| targets:1   AAGUACUCCCUCCGUUUCU   19 Target Full Sequence	1.0	Sequence 7070 from Patent EP2559767	NA	coding protein	psRNATarget
JB170422.1	ncRNA:19   AUCAUGAGGGAGGCAAAGA   1   *|||||||||||||||||| targets:1   AAGUACUCCCUCCGUUUCU   19 Target Full Sequence	1.0	Sequence 8086 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241075.1	ncRNA:19   AUCAUGAGGGAGGCAAAGA   1   *|||||||||||||||||| targets:1   AAGUACUCCCUCCGUUUCU   19 Target Full Sequence	1.0	Sequence 7070 from Patent EP2985353	NA	coding protein	psRNATarget
LQ242091.1	ncRNA:19   AUCAUGAGGGAGGCAAAGA   1   *|||||||||||||||||| targets:1   AAGUACUCCCUCCGUUUCU   19 Target Full Sequence	1.0	Sequence 8086 from Patent EP2985353	NA	coding protein	psRNATarget
HI408945.1	ncRNA:19   AUCAUGAGGGAGGCAAAGA   1   *|||||||||||||||||| targets:1   AAGUACUCCCUCCGUUUCU   19 Target Full Sequence	1.0	Sequence 7070 from Patent EP2074227	NA	coding protein	psRNATarget
HI409961.1	ncRNA:19   AUCAUGAGGGAGGCAAAGA   1   *|||||||||||||||||| targets:1   AAGUACUCCCUCCGUUUCU   19 Target Full Sequence	1.0	Sequence 8086 from Patent EP2074227	NA	coding protein	psRNATarget
EU955357.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   *=*|||||||||||||||||| targets:1243   GGAAGUACUCCCUCCGUUUCU   1263 Target Full Sequence	1.0	Zea mays clone 1529261 senescence-inducible chloroplast stay-green protein 1 mRNA, complete cds; nuclear gene for chloroplast product	NA	coding protein	psRNATarget
NM_001112301.2	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   *=*|||||||||||||||||| targets:1305   GGAAGUACUCCCUCCGUUUCU   1325 Target Full Sequence	1.0	Zea mays senescence-inducible chloroplast stay-green protein 2 (SGR2), mRNA	NA	coding protein	psRNATarget
LQ239399.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   ||*=||||||||||||||||* targets:1   UACGGUACUCCCUCCGUUUCG   21 Target Full Sequence	3.0	Sequence 5394 from Patent EP2985353	NA	coding protein	psRNATarget
JB167730.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   ||*=||||||||||||||||* targets:1   UACGGUACUCCCUCCGUUUCG   21 Target Full Sequence	3.0	Sequence 5394 from Patent EP2559767	NA	coding protein	psRNATarget
HI407269.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   ||*=||||||||||||||||* targets:1   UACGGUACUCCCUCCGUUUCG   21 Target Full Sequence	3.0	Sequence 5394 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235417.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   *||=*|||||||||||||||| targets:6   AAUGAUACUCCCUCCGUUUCU   26 Target Full Sequence	2.0	Sequence 1412 from Patent EP2985353	NA	coding protein	psRNATarget
JB163748.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   *||=*|||||||||||||||| targets:6   AAUGAUACUCCCUCCGUUUCU   26 Target Full Sequence	2.0	Sequence 1412 from Patent EP2559767	NA	coding protein	psRNATarget
HI403287.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   *||=*|||||||||||||||| targets:6   AAUGAUACUCCCUCCGUUUCU   26 Target Full Sequence	2.0	Sequence 1412 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239449.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   **|||||||=||||||||||* targets:1   CUUAGUACUUCCUCCGUUUCG   21 Target Full Sequence	2.5	Sequence 5444 from Patent EP2985353	NA	coding protein	psRNATarget
JB167780.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   **|||||||=||||||||||* targets:1   CUUAGUACUUCCUCCGUUUCG   21 Target Full Sequence	2.5	Sequence 5444 from Patent EP2559767	NA	coding protein	psRNATarget
HI407319.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   **|||||||=||||||||||* targets:1   CUUAGUACUUCCUCCGUUUCG   21 Target Full Sequence	2.5	Sequence 5444 from Patent EP2074227	NA	coding protein	psRNATarget
BT065083.2	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   ||||*|*|||||||||||||| targets:201   UAUACUCCUCCCUCCGUUUCU   221 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0081B22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156655.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   |*||*|||||||||||||||| targets:1283   UCUAAUACUCCCUCCGUUUCU   1303 Target Full Sequence	1.0	Zea mays wax synthase (LOC100283756), mRNA	NA	coding protein	psRNATarget
EU965844.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   |*||*|||||||||||||||| targets:1283   UCUAAUACUCCCUCCGUUUCU   1303 Target Full Sequence	1.0	Zea mays clone 289333 wax synthase isoform 3 mRNA, complete cds	NA	coding protein	psRNATarget
EU971616.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   **|=||||||||||||||||* targets:1157   CUUGGUACUCCCUCCGUUUCG   1177 Target Full Sequence	2.0	Zea mays clone 368130 rieske domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
LQ240700.1	ncRNA:19   AUCAUGAGGGAGGCAAAGA   1   ||*|||||||||||||||| targets:1   UACUACUCCCUCCGUUUCU   19 Target Full Sequence	1.0	Sequence 6695 from Patent EP2985353	NA	coding protein	psRNATarget
JB169031.1	ncRNA:19   AUCAUGAGGGAGGCAAAGA   1   ||*|||||||||||||||| targets:1   UACUACUCCCUCCGUUUCU   19 Target Full Sequence	1.0	Sequence 6695 from Patent EP2559767	NA	coding protein	psRNATarget
HI408570.1	ncRNA:19   AUCAUGAGGGAGGCAAAGA   1   ||*|||||||||||||||| targets:1   UACUACUCCCUCCGUUUCU   19 Target Full Sequence	1.0	Sequence 6695 from Patent EP2074227	NA	coding protein	psRNATarget
JB167731.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   **|*||||||||||||||||| targets:1   AUUUGUACUCCCUCCGUUUCU   21 Target Full Sequence	1.0	Sequence 5395 from Patent EP2559767	NA	coding protein	psRNATarget
HI407270.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   **|*||||||||||||||||| targets:1   AUUUGUACUCCCUCCGUUUCU   21 Target Full Sequence	1.0	Sequence 5395 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239400.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   **|*||||||||||||||||| targets:1   AUUUGUACUCCCUCCGUUUCU   21 Target Full Sequence	1.0	Sequence 5395 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235486.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   **|*||||||||||||||||| targets:6   CUUCGUACUCCCUCCGUUUCU   26 Target Full Sequence	1.0	Sequence 1481 from Patent EP2985353	NA	coding protein	psRNATarget
HI403356.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   **|*||||||||||||||||| targets:6   CUUCGUACUCCCUCCGUUUCU   26 Target Full Sequence	1.0	Sequence 1481 from Patent EP2074227	NA	coding protein	psRNATarget
JB163817.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   **|*||||||||||||||||| targets:6   CUUCGUACUCCCUCCGUUUCU   26 Target Full Sequence	1.0	Sequence 1481 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008677073.2	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   **||*|||||||||||||||| targets:1522   CCUACUACUCCCUCCGUUUCU   1542 Target Full Sequence	1.0	PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA	NA	coding protein	psRNATarget
NM_001148943.2	ncRNA:21   AUAUC-AUGAGGGAGGCAAAGA   1   |=*||-|||||||||||||||| targets:1537   UGAAGAUACUCCCUCCGUUUCU   1558 Target Full Sequence	3.0	Zea mays uncharacterized LOC100274590 (LOC100274590), mRNA	NA	coding protein	psRNATarget
BT086687.1	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   *=||*||||||||||||||=| targets:341   CGUACUACUCCCUCCGUUUUU   361 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFa0098A07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654273.2	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   *=||*||||||||||||||=| targets:599   CGUACUACUCCCUCCGUUUUU   619 Target Full Sequence	2.5	PREDICTED: Zea mays outer envelope pore protein 16-3, chloroplastic/mitochondrial (LOC100501951), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008654274.2	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   *=||*||||||||||||||=| targets:621   CGUACUACUCCCUCCGUUUUU   641 Target Full Sequence	2.5	PREDICTED: Zea mays outer envelope pore protein 16-3, chloroplastic/mitochondrial (LOC100501951), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654275.2	ncRNA:21   AUAUCAUGAGGGAGGCAAAGA   1   *=||*||||||||||||||=| targets:947   CGUACUACUCCCUCCGUUUUU   967 Target Full Sequence	2.5	PREDICTED: Zea mays outer envelope pore protein 16-3, chloroplastic/mitochondrial (LOC100501951), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674191.2	ncRNA:21   AUAUC-AUGAGGGAGGCAAAGA   1   **|=|-|||||||||||||||| targets:1145   GUUGGAUACUCCCUCCGUUUCU   1166 Target Full Sequence	3.0	PREDICTED: Zea mays putative protein S-acyltransferase 16 (LOC100273154), transcript variant X1, mRNA	NA	coding protein	psRNATarget