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BaseInfo

ncRNA ID osa-miRf10118-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 24
Mature sequence(if miRNA) NA - UACAUUCCUUGAGGAGGUACCAUG - NA
Stem-loop(if miRNA)    C         U                         CAAAAAA    A      AUUU     CUGAUAGUACC
GAG AAUUUUACA UCCUUGAGGAGGUACCAUGGGGUAC       UUUA UGUAAA    GGUAC           U
||| ||||||||| |||||||||||||||||||||||||       |||| ||||||    |||||
CUC UUAAAAUGU AGGAACUCCUCCAUGGUACUCCAUG       AGAU ACAUUU    UCAUA           A
   A         C                         AUAAAAA    A      -AAA     GAGAACUAUGG
Stem-loop sequence GAGCAAUUUUACAUUCCUUGAGGAGGUACCAUGGGGUACCAAAAAAUUUAAUGUAAAAUUUGGUACCUGAUAGUACCUAGGUAUCAAGAGAUACUAAAUUUACAAUAGAAAAAAUAGUACCUCAUGGUACCUCCUCAAGGACUGUAAAAUUACUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK111962.1
ncRNA:24   GUACCAUGGAGGAGUUCCUUACAU   1
  *|||*|*|||||||||||||||||
targets:1166   GAUGCUUCCUCCUCAAGGAAUGUA   1189

1.0 Oryza sativa Japonica Group cDNA clone:001-032-B06, full insert sequence NA coding protein psRNATarget
AK111498.1
ncRNA:24   GUACCAUGGAGGAGUUCCUUACAU   1
  *|||*|*|||||||||||||||||
targets:1183   GAUGCUUCCUCCUCAAGGAAUGUA   1206

1.0 Oryza sativa Japonica Group cDNA clone:J013000H23, full insert sequence NA coding protein psRNATarget
XM_015764822.1
ncRNA:24   GUACCAUGGAGGAGUUCCUUACAU   1
  *|||*|*|||||||||||||||||
targets:1187   GAUGCUUCCUCCUCAAGGAAUGUA   1210

1.0 PREDICTED: Oryza sativa Japonica Group zinc finger CCCH domain-containing protein 65 (LOC4351978), transcript variant X8, mRNA zinc finger CCCH domain-containing protein 65(LOC4351978) coding protein psRNATarget
XM_015764820.1
ncRNA:24   GUACCAUGGAGGAGUUCCUUACAU   1
  *|||*|*|||||||||||||||||
targets:1190   GAUGCUUCCUCCUCAAGGAAUGUA   1213

1.0 PREDICTED: Oryza sativa Japonica Group zinc finger CCCH domain-containing protein 65 (LOC4351978), transcript variant X7, mRNA zinc finger CCCH domain-containing protein 65(LOC4351978) coding protein psRNATarget
XM_015764819.1
ncRNA:24   GUACCAUGGAGGAGUUCCUUACAU   1
  *|||*|*|||||||||||||||||
targets:1196   GAUGCUUCCUCCUCAAGGAAUGUA   1219

1.0 PREDICTED: Oryza sativa Japonica Group zinc finger CCCH domain-containing protein 65 (LOC4351978), transcript variant X6, mRNA zinc finger CCCH domain-containing protein 65(LOC4351978) coding protein psRNATarget
XM_015764818.1
ncRNA:24   GUACCAUGGAGGAGUUCCUUACAU   1
  *|||*|*|||||||||||||||||
targets:1200   GAUGCUUCCUCCUCAAGGAAUGUA   1223

1.0 PREDICTED: Oryza sativa Japonica Group zinc finger CCCH domain-containing protein 65 (LOC4351978), transcript variant X5, mRNA zinc finger CCCH domain-containing protein 65(LOC4351978) coding protein psRNATarget
AK121774.1
ncRNA:24   GUACCAUGGAGGAGUUCCUUACAU   1
  *|||*|*|||||||||||||||||
targets:1240   GAUGCUUCCUCCUCAAGGAAUGUA   1263

1.0 Oryza sativa Japonica Group cDNA clone:J033092M18, full insert sequence NA coding protein psRNATarget
XM_015764817.1
ncRNA:24   GUACCAUGGAGGAGUUCCUUACAU   1
  *|||*|*|||||||||||||||||
targets:1246   GAUGCUUCCUCCUCAAGGAAUGUA   1269

1.0 PREDICTED: Oryza sativa Japonica Group zinc finger CCCH domain-containing protein 65 (LOC4351978), transcript variant X4, mRNA zinc finger CCCH domain-containing protein 65(LOC4351978) coding protein psRNATarget
XM_015764816.1
ncRNA:24   GUACCAUGGAGGAGUUCCUUACAU   1
  *|||*|*|||||||||||||||||
targets:1249   GAUGCUUCCUCCUCAAGGAAUGUA   1272

1.0 PREDICTED: Oryza sativa Japonica Group zinc finger CCCH domain-containing protein 65 (LOC4351978), transcript variant X3, mRNA zinc finger CCCH domain-containing protein 65(LOC4351978) coding protein psRNATarget
XM_015764815.1
ncRNA:24   GUACCAUGGAGGAGUUCCUUACAU   1
  *|||*|*|||||||||||||||||
targets:1256   GAUGCUUCCUCCUCAAGGAAUGUA   1279

1.0 PREDICTED: Oryza sativa Japonica Group zinc finger CCCH domain-containing protein 65 (LOC4351978), transcript variant X2, mRNA zinc finger CCCH domain-containing protein 65(LOC4351978) coding protein psRNATarget
XM_015764814.1
ncRNA:24   GUACCAUGGAGGAGUUCCUUACAU   1
  *|||*|*|||||||||||||||||
targets:1260   GAUGCUUCCUCCUCAAGGAAUGUA   1283

1.0 PREDICTED: Oryza sativa Japonica Group zinc finger CCCH domain-containing protein 65 (LOC4351978), transcript variant X1, mRNA zinc finger CCCH domain-containing protein 65(LOC4351978) coding protein psRNATarget
XM_015779910.1
ncRNA:24   GUACCAUGGAGGAGUUCCUUACAU   1
  ==||*|||||||||||||||*|||
targets:545   UGUGAUACCUCCUCAAGGAACGUA   568

1.5 PREDICTED: Oryza sativa Japonica Group pEARLI1-like lipid transfer protein 1 (LOC9272463), mRNA pEARLI1-like lipid transfer protein 1(LOC9272463) coding protein psRNATarget
XM_015768848.1
ncRNA:24   GUA--CCAUGGAGGAGUUCCUUACAU   1
  |=|--||*||||||||||||||*|||
targets:592   CGUUCGGGACCUCCUCAAGGAAAGUA   617

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279961 (LOC107279961), mRNA uncharacterized LOC107279961(LOC107279961) coding protein psRNATarget
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