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BaseInfo

ncRNA ID novel_zma_miR5207
Species Zea mays
Class miRNA
Genome position Chr4:238370708-238370922 [+]
Reference genome RefGen_v4
Source SRR2287165
Length 24
Mature sequence(if miRNA) 192 - GCUUGCACAGAAGGACUGCUUGUA - 215
Stem-loop(if miRNA) --        G     A          A                          ACGA    A   - AGAUAC  CCAUGGUUUGUUAAUAAUUUUUUUAUAAAGAUUAUU
  CAAGCAGU CUUCU UGCAAGCGUG AAGCAAACCAUCUGAUCCAUUAGAUU    UCCA CCA C      AA                                    G
  |||||||| ||||| |||||||||| ||||||||||||||||||||||||||    |||| ||| |      ||                                    A
  GUUCGUCA GAAGA ACGUUCGCAC UUCGUUUGGUAGACUAGGUAAUUUAG    CUAG GUU A      CA                                    G
AU        G     C          G                          --CA    -   A ------  UUCAGUGUAAAUUGUGAAUUUAGGAAGGUGGUGGUC
Stem-loop sequence CAAGCAGUGCUUCUAUGCAAGCGUGAAAGCAAACCAUCUGAUCCAUUAGAUUACGAUCCAACCACAGAUACAACCAUGGUUUGUUAAUAAUUUUUUUAUAAAGAUUAUUGAGCUGGUGGUGGAAGGAUUUAAGUGUUAAAUGUGACUUACAAUUGGAUCACGAUUUAAUGGAUCAGAUGGUUUGCUUGCACGCUUGCACAGAAGGACUGCUUGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ235511.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:3   UGCAAGCAGUCCUUCUGUGCAAGC   26

0.0 Sequence 1506 from Patent EP2985353 NA coding protein psRNATarget
JB163842.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:3   UGCAAGCAGUCCUUCUGUGCAAGC   26

0.0 Sequence 1506 from Patent EP2559767 NA coding protein psRNATarget
HI403381.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:3   UGCAAGCAGUCCUUCUGUGCAAGC   26

0.0 Sequence 1506 from Patent EP2074227 NA coding protein psRNATarget
LQ235525.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:3   UGCAAGCAGUCCUUCUGUGCAAGC   26

0.0 Sequence 1520 from Patent EP2985353 NA coding protein psRNATarget
HI403395.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:3   UGCAAGCAGUCCUUCUGUGCAAGC   26

0.0 Sequence 1520 from Patent EP2074227 NA coding protein psRNATarget
JB163856.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:3   UGCAAGCAGUCCUUCUGUGCAAGC   26

0.0 Sequence 1520 from Patent EP2559767 NA coding protein psRNATarget
JB163608.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:11   UGCAAGCAGUCCUUCUGUGCAAGC   34

0.0 Sequence 1272 from Patent EP2559767 NA coding protein psRNATarget
HI403187.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:11   UGCAAGCAGUCCUUCUGUGCAAGC   34

0.0 Sequence 1312 from Patent EP2074227 NA coding protein psRNATarget
LQ235317.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:11   UGCAAGCAGUCCUUCUGUGCAAGC   34

0.0 Sequence 1312 from Patent EP2985353 NA coding protein psRNATarget
JB163648.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:11   UGCAAGCAGUCCUUCUGUGCAAGC   34

0.0 Sequence 1312 from Patent EP2559767 NA coding protein psRNATarget
LQ235277.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:11   UGCAAGCAGUCCUUCUGUGCAAGC   34

0.0 Sequence 1272 from Patent EP2985353 NA coding protein psRNATarget
HI403147.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:11   UGCAAGCAGUCCUUCUGUGCAAGC   34

0.0 Sequence 1272 from Patent EP2074227 NA coding protein psRNATarget
HI409052.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:11   UGCAAGCAGUCCUUCUGUGCAAGC   34

0.0 Sequence 7177 from Patent EP2074227 NA coding protein psRNATarget
LQ241182.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:11   UGCAAGCAGUCCUUCUGUGCAAGC   34

0.0 Sequence 7177 from Patent EP2985353 NA coding protein psRNATarget
JB169513.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:11   UGCAAGCAGUCCUUCUGUGCAAGC   34

0.0 Sequence 7177 from Patent EP2559767 NA coding protein psRNATarget
XM_008680394.2
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:97   UGCAAGCAGUCCUUCUGUGCAAGC   120

0.0 PREDICTED: Zea mays mini zinc finger protein 4 (LOC103653502), mRNA NA coding protein psRNATarget
BT066599.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:645   UGCAAGCAGUCCUUCUGUGCAAGC   668

0.0 Zea mays full-length cDNA clone ZM_BFb0034B07 mRNA, complete cds NA coding protein psRNATarget
NM_001151629.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:2036   UGCAAGCAGUCCUUCUGUGCAAGC   2059

0.0 Zea mays uncharacterized LOC100278316 (si946092e03), mRNA NA coding protein psRNATarget
EU972964.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||||||||||||||||
targets:2036   UGCAAGCAGUCCUUCUGUGCAAGC   2059

0.0 Zea mays clone 390894 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
JB163464.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |==|||||||||||||||||||||
targets:11   UGUAAGCAGUCCUUCUGUGCAAGC   34

0.0 Sequence 1128 from Patent EP2559767 NA coding protein psRNATarget
HI403003.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |==|||||||||||||||||||||
targets:11   UGUAAGCAGUCCUUCUGUGCAAGC   34

0.0 Sequence 1128 from Patent EP2074227 NA coding protein psRNATarget
LQ235133.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |==|||||||||||||||||||||
targets:11   UGUAAGCAGUCCUUCUGUGCAAGC   34

0.0 Sequence 1128 from Patent EP2985353 NA coding protein psRNATarget
JB163734.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |||||*||||||||||||||||||
targets:3   UACAAACAGUCCUUCUGUGCAAGC   26

1.0 Sequence 1398 from Patent EP2559767 NA coding protein psRNATarget
HI403273.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |||||*||||||||||||||||||
targets:3   UACAAACAGUCCUUCUGUGCAAGC   26

1.0 Sequence 1398 from Patent EP2074227 NA coding protein psRNATarget
LQ235403.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |||||*||||||||||||||||||
targets:3   UACAAACAGUCCUUCUGUGCAAGC   26

1.0 Sequence 1398 from Patent EP2985353 NA coding protein psRNATarget
LQ235069.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |==||||||||||||||||=||||
targets:11   UGUAAGCAGUCCUUCUGUGUAAGC   34

1.5 Sequence 1064 from Patent EP2985353 NA coding protein psRNATarget
JB163400.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |==||||||||||||||||=||||
targets:11   UGUAAGCAGUCCUUCUGUGUAAGC   34

1.5 Sequence 1064 from Patent EP2559767 NA coding protein psRNATarget
HI402939.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |==||||||||||||||||=||||
targets:11   UGUAAGCAGUCCUUCUGUGUAAGC   34

1.5 Sequence 1064 from Patent EP2074227 NA coding protein psRNATarget
JB163578.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |==||||||||||||||||=||||
targets:11   UGUAAGCAGUCCUUCUGUGUAAGC   34

1.5 Sequence 1242 from Patent EP2559767 NA coding protein psRNATarget
LQ235247.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |==||||||||||||||||=||||
targets:11   UGUAAGCAGUCCUUCUGUGUAAGC   34

1.5 Sequence 1242 from Patent EP2985353 NA coding protein psRNATarget
HI403117.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |==||||||||||||||||=||||
targets:11   UGUAAGCAGUCCUUCUGUGUAAGC   34

1.5 Sequence 1242 from Patent EP2074227 NA coding protein psRNATarget
XM_020548736.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  ||||||||||*|||||||||||||
targets:1656   UACAAGCAGUGCUUCUGUGCAAGC   1679

1.0 PREDICTED: Zea mays uncharacterized LOC103648255 (LOC103648255), mRNA NA coding protein psRNATarget
HI403344.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=|||*||||||||||||||||||
targets:3   UGCAACCAGUCCUUCUGUGCAAGC   26

1.0 Sequence 1469 from Patent EP2074227 NA coding protein psRNATarget
LQ235474.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=|||*||||||||||||||||||
targets:3   UGCAACCAGUCCUUCUGUGCAAGC   26

1.0 Sequence 1469 from Patent EP2985353 NA coding protein psRNATarget
JB163805.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=|||*||||||||||||||||||
targets:3   UGCAACCAGUCCUUCUGUGCAAGC   26

1.0 Sequence 1469 from Patent EP2559767 NA coding protein psRNATarget
HI403317.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |==||*||||||||||||||||||
targets:3   UGUAAACAGUCCUUCUGUGCAAGC   26

1.0 Sequence 1442 from Patent EP2074227 NA coding protein psRNATarget
JB163778.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |==||*||||||||||||||||||
targets:3   UGUAAACAGUCCUUCUGUGCAAGC   26

1.0 Sequence 1442 from Patent EP2559767 NA coding protein psRNATarget
LQ235447.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |==||*||||||||||||||||||
targets:3   UGUAAACAGUCCUUCUGUGCAAGC   26

1.0 Sequence 1442 from Patent EP2985353 NA coding protein psRNATarget
XM_008679933.2
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||=|||||||*|||||
targets:1630   UGCAAGCAGUUCUUCUGUACAAGC   1653

2.5 PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020538741.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||*=||||||||||||
targets:804   UGCAAGCAGUGUUUCUGUGCAAGC   827

2.5 PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008648194.2
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=||||||||*=||||||||||||
targets:804   UGCAAGCAGUGUUUCUGUGCAAGC   827

2.5 PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008664646.2
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=|||*||*|||||||||||||||
targets:206   UGCAAACAAUCCUUCUGUGCAAGC   229

2.0 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X6, mRNA NA coding protein psRNATarget
XM_008664645.2
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=|||*||*|||||||||||||||
targets:206   UGCAAACAAUCCUUCUGUGCAAGC   229

2.0 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X5, mRNA NA coding protein psRNATarget
XM_008664644.2
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |=|||*||*|||||||||||||||
targets:206   UGCAAACAAUCCUUCUGUGCAAGC   229

2.0 PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X2, mRNA NA coding protein psRNATarget
JB163560.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |==|||||*||*||||||||||||
targets:11   UGUAAGCAAUCAUUCUGUGCAAGC   34

2.5 Sequence 1224 from Patent EP2559767 NA coding protein psRNATarget
LQ235229.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |==|||||*||*||||||||||||
targets:11   UGUAAGCAAUCAUUCUGUGCAAGC   34

2.5 Sequence 1224 from Patent EP2985353 NA coding protein psRNATarget
HI403099.1
ncRNA:24   AUGUUCGUCAGGAAGACACGUUCG   1
  |==|||||*||*||||||||||||
targets:11   UGUAAGCAAUCAUUCUGUGCAAGC   34

2.5 Sequence 1224 from Patent EP2074227 NA coding protein psRNATarget
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