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BaseInfo

ncRNA ID novel_zma_miR5206
Species Zea mays
Class miRNA
Genome position Chr4:205230499-205230552 [+]
Reference genome RefGen_v4
Source SRR2287165
Length 24
Mature sequence(if miRNA) 31 - AACUAGCGGACGACAAAUAUUCAA - 54
Stem-loop(if miRNA) --UUU        -      C      A
     UAUUUGUC UUCGUU AGUUCA A
     |||||||| |||||| ||||||
     AUAAACAG AGGCGA UCAAGU A
AACUU        C      -      A
Stem-loop sequence UUUUAUUUGUCUUCGUUCAGUUCAAAAAUGAACUAGCGGACGACAAAUAUUCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ053859.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  ||||||||||||||||||||||||
targets:67   UUGAAUAUUUGUCGUCCGCUAGUU   90

0.0 TSA: Zea mays contig54981, mRNA sequence NA coding protein psRNATarget
XM_008669376.2
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  ||||||||||||||||=|||||||
targets:1134   UUGAAUAUUUGUCGUCUGCUAGUU   1157

1.5 PREDICTED: Zea mays uncharacterized LOC100274235 (LOC100274235), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001148605.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  ||||||||||||||||=|||||||
targets:1176   UUGAAUAUUUGUCGUCUGCUAGUU   1199

1.5 Zea mays uncharacterized LOC100274235 (LOC100274235), mRNA NA coding protein psRNATarget
BT042586.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  ||||||||||||||||=|||||||
targets:1176   UUGAAUAUUUGUCGUCUGCUAGUU   1199

1.5 Zea mays full-length cDNA clone ZM_BFb0347D09 mRNA, complete cds NA coding protein psRNATarget
XM_008669377.2
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  ||||||||||||||||=|||||||
targets:1237   UUGAAUAUUUGUCGUCUGCUAGUU   1260

1.5 PREDICTED: Zea mays uncharacterized LOC100274235 (LOC100274235), transcript variant X2, mRNA NA coding protein psRNATarget
EU957049.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  ||||||||||||||||=|||||||
targets:2171   UUGAAUAUUUGUCGUCUGCUAGUU   2194

1.5 Zea mays clone 1581267 mRNA sequence NA coding protein psRNATarget
EU949554.1
ncRNA:24   AA-CUUAUAAACAGCAGGCGAUCAA   1
  ||-||||||||||||||||||||||
targets:411   UUCGAAUAUUUGUCGUCCGCUAGUU   435

0.0 Zea mays clone 424261 mRNA sequence NA coding protein psRNATarget
EZ113277.1
ncRNA:24   AA-CUUAUAAACAGCAGGCGAUCAA   1
  ||-||||||||||||||||||||||
targets:591   UUCGAAUAUUUGUCGUCCGCUAGUU   615

0.0 TSA: Zea mays contig48938, mRNA sequence NA coding protein psRNATarget
AY109049.2
ncRNA:24   AA-CUUAUAAACAGCAGGCGAUCAA   1
  ||-||||||||||||||||||||||
targets:464   UUCGAAUAUUUGUCGUCCGCUAGUU   488

0.0 Zea mays PCO094720 mRNA sequence NA coding protein psRNATarget
BT068579.1
ncRNA:24   AA-CUUAUAAACAGCAGGCGAUCAA   1
  ||-||||||||||||||||||||||
targets:1453   UUCGAAUAUUUGUCGUCCGCUAGUU   1477

0.0 Zea mays full-length cDNA clone ZM_BFb0339J04 mRNA, complete cds NA coding protein psRNATarget
BT034355.1
ncRNA:24   AA-CUUAUAAACAGCAGGCGAUCAA   1
  ||-||||||||||||||||||||||
targets:1550   UUCGAAUAUUUGUCGUCCGCUAGUU   1574

0.0 Zea mays full-length cDNA clone ZM_BFc0007D11 mRNA, complete cds NA coding protein psRNATarget
NM_001347903.1
ncRNA:24   AA-CUUAUAAACAGCAGGCGAUCAA   1
  ||-||||||||||||||||||||||
targets:1617   UUCGAAUAUUUGUCGUCCGCUAGUU   1641

0.0 Zea mays Sulfoquinovosyl transferase SQD2 (pco094720a), mRNA NA coding protein psRNATarget
BT068416.1
ncRNA:24   AA-CUUAUAAACAGCAGGCGAUCAA   1
  ||-||||||||||||||||||||||
targets:1617   UUCGAAUAUUUGUCGUCCGCUAGUU   1641

0.0 Zea mays full-length cDNA clone ZM_BFb0181F19 mRNA, complete cds NA coding protein psRNATarget
XM_008652607.2
ncRNA:24   AA-CUUAUAAACAGCAGGCGAUCAA   1
  ||-||||||||||||||||||||||
targets:1661   UUCGAAUAUUUGUCGUCCGCUAGUU   1685

0.0 PREDICTED: Zea mays Sulfoquinovosyl transferase SQD2 (pco094720a), transcript variant X1, mRNA NA coding protein psRNATarget
BT061377.1
ncRNA:24   AA-CUUAUAAACAGCAGGCGAUCAA   1
  ||-||||||||||||||||||||||
targets:1704   UUCGAAUAUUUGUCGUCCGCUAGUU   1728

0.0 Zea mays full-length cDNA clone ZM_BFb0140P11 mRNA, complete cds NA coding protein psRNATarget
BT087620.1
ncRNA:24   AA-CUUAUAAACAGCAGGCGAUCAA   1
  ||-||||||||||||||||||||||
targets:1978   UUCGAAUAUUUGUCGUCCGCUAGUU   2002

0.0 Zea mays full-length cDNA clone ZM_BFb0134K18 mRNA, complete cds NA coding protein psRNATarget
EZ071175.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  ||||||||||||||*|||||||||
targets:107   UUGAAUAUUUGUCGCCCGCUAGUU   130

1.5 TSA: Zea mays contig06812, mRNA sequence NA coding protein psRNATarget
BT038580.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||||||||||||
targets:1345   UCGAAUAUUUGUCGUCCGCUAGUU   1368

0.0 Zea mays full-length cDNA clone ZM_BFb0295B07 mRNA, complete cds NA coding protein psRNATarget
EU965454.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||||||||||||
targets:1371   UCGAAUAUUUGUCGUCCGCUAGUU   1394

0.0 Zea mays clone 286145 nucleic acid binding protein mRNA, complete cds NA coding protein psRNATarget
NM_001156559.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||||||||||||
targets:1371   UCGAAUAUUUGUCGUCCGCUAGUU   1394

0.0 Zea mays nucleic acid binding protein (LOC100283658), mRNA NA coding protein psRNATarget
EU940941.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||||||||||||
targets:1741   UCGAAUAUUUGUCGUCCGCUAGUU   1764

0.0 Zea mays clone 1218400 mRNA sequence NA coding protein psRNATarget
NM_001153830.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||||||||||||
targets:2168   UCGAAUAUUUGUCGUCCGCUAGUU   2191

0.0 Zea mays regulatory subunit (LOC100280910), mRNA NA coding protein psRNATarget
EU954561.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||||||||||||
targets:2168   UCGAAUAUUUGUCGUCCGCUAGUU   2191

0.0 Zea mays clone 1470172 regulatory subunit mRNA, complete cds NA coding protein psRNATarget
XM_008645362.2
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||||||||||||
targets:2239   UCGAAUAUUUGUCGUCCGCUAGUU   2262

0.0 PREDICTED: Zea mays regulatory subunit (LOC100280910), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008645361.2
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||||||||||||
targets:2257   UCGAAUAUUUGUCGUCCGCUAGUU   2280

0.0 PREDICTED: Zea mays regulatory subunit (LOC100280910), transcript variant X1, mRNA NA coding protein psRNATarget
EZ053711.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||||||||=|||
targets:113   UCGAAUAUUUGUCGUCCGCUGGUU   136

1.5 TSA: Zea mays contig54833, mRNA sequence NA coding protein psRNATarget
EZ062630.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*|=||||||||||||||||||||
targets:56   UCGGAUAUUUGUCGUCCGCUAGUU   79

0.0 TSA: Zea mays contig63752, mRNA sequence NA coding protein psRNATarget
XM_008665300.2
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||||||||=|||
targets:2083   UCGAAUAUUUGUCGUCCGCUGGUU   2106

1.5 PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008665299.2
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||||||||=|||
targets:2095   UCGAAUAUUUGUCGUCCGCUGGUU   2118

1.5 PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008665301.2
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||||||||=|||
targets:2148   UCGAAUAUUUGUCGUCCGCUGGUU   2171

1.5 PREDICTED: Zea mays trichohyalin-like (LOC103641991), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008669887.2
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||||=|||||||
targets:2512   UCGAAUAUUUGUCGUCUGCUAGUU   2535

1.5 PREDICTED: Zea mays zeaxanthin epoxidase (LOC100285076), transcript variant X1, mRNA NA coding protein psRNATarget
EU966969.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |**|||||||||||||||||||||
targets:1059   UCUAAUAUUUGUCGUCCGCUAGUU   1082

0.0 Zea mays clone 298544 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001150789.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |**|||||||||||||||||||||
targets:1059   UCUAAUAUUUGUCGUCCGCUAGUU   1082

0.0 Zea mays uncharacterized LOC100277135 (LOC100277135), mRNA NA coding protein psRNATarget
AY104299.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |**|||||||||||||||||||||
targets:1281   UCAAAUAUUUGUCGUCCGCUAGUU   1304

0.0 Zea mays PCO075569 mRNA sequence NA coding protein psRNATarget
AY486125.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  ||*|||||||||||||=||||||*
targets:1813   UUAAAUAUUUGUCGUCUGCUAGUG   1836

2.5 Zea mays SNF1-related protein kinase mRNA, complete cds NA coding protein psRNATarget
NM_001112203.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  ||*|||||||||||||=||||||*
targets:1813   UUAAAUAUUUGUCGUCUGCUAGUG   1836

2.5 Zea mays SNF1-related protein kinase (SnrK1), mRNA NA coding protein psRNATarget
BT040546.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  ||*|||||||||||||=||||||*
targets:1839   UUAAAUAUUUGUCGUCUGCUAGUG   1862

2.5 Zea mays full-length cDNA clone ZM_BFc0099N18 mRNA, complete cds NA coding protein psRNATarget
AY107942.2
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  ||*|||||||||||||=||||||*
targets:1846   UUAAAUAUUUGUCGUCUGCUAGUG   1869

2.5 Zea mays PCO079657 mRNA sequence NA coding protein psRNATarget
XM_008650732.2
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  ||*|||||||||||||=||||||*
targets:1889   UUAAAUAUUUGUCGUCUGCUAGUG   1912

2.5 PREDICTED: Zea mays SNF1-related protein kinase (SnrK1), transcript variant X1, mRNA NA coding protein psRNATarget
BT060618.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  ||*|||||||||||||=||||||*
targets:1839   UUAAAUAUUUGUCGUCUGCUAGUG   1862

2.5 Zea mays full-length cDNA clone ZM_BFb0024P20 mRNA, complete cds NA coding protein psRNATarget
EZ049723.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||*|||||||||
targets:61   UCGAAUAUUUGUCGCCCGCUAGUU   84

1.5 TSA: Zea mays contig50841, mRNA sequence NA coding protein psRNATarget
EZ051209.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||*|||||||||||||
targets:4   UCGAAUAUUUAUCGUCCGCUAGUU   27

1.0 TSA: Zea mays contig52329, mRNA sequence NA coding protein psRNATarget
EZ059384.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  ||*||||||||||||||*||||||
targets:14   UUAAAUAUUUGUCGUCCACUAGUU   37

1.5 TSA: Zea mays contig60506, mRNA sequence NA coding protein psRNATarget
BT083888.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||||*|||||||
targets:1118   UCGAAUAUUUGUCGUCAGCUAGUU   1141

1.5 Zea mays full-length cDNA clone ZM_BFb0051D08 mRNA, complete cds NA coding protein psRNATarget
NM_001177150.2
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||||*|||||||
targets:1269   UCGAAUAUUUGUCGUCAGCUAGUU   1292

1.5 Zea mays hypothetical protein (umc1687), mRNA NA coding protein psRNATarget
XM_008675718.2
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*|||||||||||*||||||||||
targets:1140   UCGAAUAUUUGUCAUCCGCUAGUU   1163

1.5 PREDICTED: Zea mays uncharacterized LOC103650050 (LOC103650050), mRNA NA coding protein psRNATarget
NM_001148677.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||||*|||||||
targets:1286   UCGAAUAUUUGUCGUCAGCUAGUU   1309

1.5 Zea mays hypothetical protein (umc1687), mRNA NA coding protein psRNATarget
BT042757.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||||*|||||||
targets:1286   UCGAAUAUUUGUCGUCAGCUAGUU   1309

1.5 Zea mays full-length cDNA clone ZM_BFc0037D18 mRNA, complete cds NA coding protein psRNATarget
EU940900.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*|||||*||||||||||||||||
targets:1249   UCGAAUAAUUGUCGUCCGCUAGUU   1272

1.0 Zea mays clone 1168188 mRNA sequence NA coding protein psRNATarget
BT042256.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||*|||||||||
targets:859   UCGAAUAUUUGUCGCCCGCUAGUU   882

1.5 Zea mays full-length cDNA clone ZM_BFb0181G14 mRNA, complete cds NA coding protein psRNATarget
EU970775.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||*|||||||||
targets:2263   UCGAAUAUUUGUCGCCCGCUAGUU   2286

1.5 Zea mays clone 350572 zeaxanthin epoxidase mRNA, complete cds NA coding protein psRNATarget
NM_001157971.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||||||*|||||||||
targets:2263   UCGAAUAUUUGUCGCCCGCUAGUU   2286

1.5 Zea mays zeaxanthin epoxidase (LOC100285076), mRNA NA coding protein psRNATarget
NM_001165424.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*|||||*||||=|||||||||||
targets:1615   UCGAAUAGUUGUUGUCCGCUAGUU   1638

2.5 Zea mays uncharacterized LOC100303788 (LOC100303788), mRNA NA coding protein psRNATarget
BT038203.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*|||||*||||=|||||||||||
targets:1615   UCGAAUAGUUGUUGUCCGCUAGUU   1638

2.5 Zea mays full-length cDNA clone ZM_BFb0217A17 mRNA, complete cds NA coding protein psRNATarget
XM_008660527.2
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*|||||*||||=|||||||||||
targets:1674   UCGAAUAGUUGUUGUCCGCUAGUU   1697

2.5 PREDICTED: Zea mays uncharacterized LOC100303788 (LOC100303788), transcript variant X1, mRNA NA coding protein psRNATarget
EZ084539.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |**|||||||||||*|||||||||
targets:31   UCAAAUAUUUGUCGCCCGCUAGUU   54

1.5 TSA: Zea mays contig20183, mRNA sequence NA coding protein psRNATarget
EZ063297.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||=|||*|||||||||=|||||
targets:5   UCGAGUAUCUGUCGUCCGUUAGUU   28

2.5 TSA: Zea mays contig64419, mRNA sequence NA coding protein psRNATarget
BT039911.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |**||||||||||||||||||*||
targets:726   UCAAAUAUUUGUCGUCCGCUAAUU   749

1.5 Zea mays full-length cDNA clone ZM_BFc0050M05 mRNA, complete cds NA coding protein psRNATarget
XM_020537813.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||*||||||||||*||
targets:879   UCGAAUAUUUAUCGUCCGCUAUUU   902

2.5 PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020537812.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||*||||||||||*||
targets:933   UCGAAUAUUUAUCGUCCGCUAUUU   956

2.5 PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020537811.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||*||||||||||*||
targets:985   UCGAAUAUUUAUCGUCCGCUAUUU   1008

2.5 PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020537810.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||*||||||||||*||
targets:1038   UCGAAUAUUUAUCGUCCGCUAUUU   1061

2.5 PREDICTED: Zea mays uncharacterized LOC103625705 (LOC103625705), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008660842.2
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |**|||||||*|||||||=|||||
targets:3032   UCAAAUAUUUAUCGUCCGUUAGUU   3055

2.5 PREDICTED: Zea mays hypothetical protein (LOC103637791), mRNA NA coding protein psRNATarget
XM_020545884.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  |*||||||||*|||||||*|||||
targets:3522   UCGAAUAUUUAUCGUCCGAUAGUU   3545

2.5 PREDICTED: Zea mays E3 ubiquitin-protein ligase PUB23 (LOC103642284), mRNA NA coding protein psRNATarget
EZ064379.1
ncRNA:24   AACUUAUAAACAGCAGGCGAUCAA   1
  ||-||||||*|||||||*||||||
targets:161   UU-AAUAUUCGUCGUCCCCUAGUU   183

2.5 TSA: Zea mays contig00011, mRNA sequence NA coding protein psRNATarget
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