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BaseInfo

ncRNA ID	novel_zma_miR5205
Species	Zea mays
Class	miRNA
Genome position	Chr4:17331670-17331802 [+]
Reference genome	RefGen_v4
Source	SRR2287165
Length	24
Mature sequence(if miRNA)	1 - AGGGCUGAUUUGGUGAUCGGAGAU - 24
Stem-loop(if miRNA)	--             U   CG A        -A                           U     A   AGGGCUGAUUUGG GAU  G GAUCCCGA  GGAUCCAUGGGGGAGAAAUCCUCUUGC AUUCA A   ||||||||||||| |||  | ||||||||  ||||||||||||||||||||||||||| |||||   UCCCGACUAAACC CUA  C CUAGGGCU  CCUAGGUACCCCCUCUUUAGGGGAAUG UAAGU A AA             U   AU C        CC                           U     U
Stem-loop sequence	AGGGCUGAUUUGGUGAUCGGAGAUCCCGAAGGAUCCAUGGGGGAGAAAUCCUCUUGCUAUUCAAAAUUGAAUUGUAAGGGGAUUUCUCCCCCAUGGAUCCCCUCGGGAUCCCUAAUCUCCAAAUCAGCCCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT018533.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   *||||=|||||=|||||||||||| targets:1918   UUCUCUGAUCAUCAAAUCAGCCCU   1941 Target Full Sequence	2.5	Zea mays clone EL01N0434E06.d mRNA sequence	NA	coding protein	psRNATarget
EU974244.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|||=|||||||||||||||| targets:490   AUCACCGGUCACCAAAUCAGCCCU   513 Target Full Sequence	1.0	Zea mays clone 443590 SAUR1 - auxin-responsive SAUR family member mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671854.2	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|||=|||||||||||||||| targets:70   AUCCCCGGUCACCAAAUCAGCCCU   93 Target Full Sequence	1.0	PREDICTED: Zea mays alpha-glucosidase 2 (LOC103647311), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI403445.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|=|=|||||||||||||||| targets:61   AUCCCUGGUCACCAAAUCAGCCCU   84 Target Full Sequence	2.0	Sequence 1570 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235575.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|=|=|||||||||||||||| targets:61   AUCCCUGGUCACCAAAUCAGCCCU   84 Target Full Sequence	2.0	Sequence 1570 from Patent EP2985353	NA	coding protein	psRNATarget
JB163906.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|=|=|||||||||||||||| targets:61   AUCCCUGGUCACCAAAUCAGCCCU   84 Target Full Sequence	2.0	Sequence 1570 from Patent EP2559767	NA	coding protein	psRNATarget
HI403301.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|=|=|||||||||||||||| targets:96   AUCCCUGGUCACCAAAUCAGCCCU   119 Target Full Sequence	2.0	Sequence 1426 from Patent EP2074227	NA	coding protein	psRNATarget
JB163762.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|=|=|||||||||||||||| targets:96   AUCCCUGGUCACCAAAUCAGCCCU   119 Target Full Sequence	2.0	Sequence 1426 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235431.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|=|=|||||||||||||||| targets:96   AUCCCUGGUCACCAAAUCAGCCCU   119 Target Full Sequence	2.0	Sequence 1426 from Patent EP2985353	NA	coding protein	psRNATarget
EZ056613.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|||=||||||||||||=||| targets:159   AUCCCCGGUCACCAAAUCAGUCCU   182 Target Full Sequence	2.5	TSA: Zea mays contig57735, mRNA sequence	NA	coding protein	psRNATarget
BT087480.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|||=||||||||||||=||| targets:866   AUCCCCGGUCACCAAAUCAGUCCU   889 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0089I03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196706.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|||=||||||||||||=||| targets:866   AUCCCCGGUCACCAAAUCAGUCCU   889 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100502229), mRNA	NA	coding protein	psRNATarget
EU967725.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|||=|||||||||||||=|| targets:1132   AUCCCCGGUCACCAAAUCAGCUCU   1155 Target Full Sequence	2.5	Zea mays clone 305590 mRNA sequence	NA	coding protein	psRNATarget
NM_001143476.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|||=|||||||||=|||||| targets:53   AUCCCCGGUCACCAAAUUAGCCCU   76 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100217107), mRNA	NA	coding protein	psRNATarget
BT037942.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|||=|||||||||=|||||| targets:53   AUCCCCGGUCACCAAAUUAGCCCU   76 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0203O02 mRNA, complete cds	NA	coding protein	psRNATarget
BT084817.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|||=|||||||||=|||||| targets:147   AUCCCCGGUCACCAAAUUAGCCCU   170 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0186I10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008675221.2	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|=|=|||||||||||||||* targets:180   AUCCCUGGUCACCAAAUCAGCCCG   203 Target Full Sequence	3.0	PREDICTED: Zea mays gibberellin responsive 1 (gar1), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB170445.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|=|||||||||||||||*|| targets:113   AUCCCUGAUCACCAAAUCAGCACU   136 Target Full Sequence	2.5	Sequence 8109 from Patent EP2559767	NA	coding protein	psRNATarget
HI409984.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|=|||||||||||||||*|| targets:113   AUCCCUGAUCACCAAAUCAGCACU   136 Target Full Sequence	2.5	Sequence 8109 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242114.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|=|||||||||||||||*|| targets:113   AUCCCUGAUCACCAAAUCAGCACU   136 Target Full Sequence	2.5	Sequence 8109 from Patent EP2985353	NA	coding protein	psRNATarget
EU950017.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|*|=|||||||||||||||| targets:512   AUCCCGGGUCACCAAAUCAGCCCU   535 Target Full Sequence	2.0	Zea mays clone 457681 mRNA sequence	NA	coding protein	psRNATarget
BT041878.2	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|||=||||||||*||||||| targets:317   AUCCCCGGUCACCAAACCAGCCCU   340 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0072B21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148227.2	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|||=||||||||*||||||| targets:317   AUCCCCGGUCACCAAACCAGCCCU   340 Target Full Sequence	2.5	Zea mays 26S proteasome non-ATPase regulatory subunit 13 homolog A (LOC100273828), mRNA	NA	coding protein	psRNATarget
XM_020540504.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|*|=|||||||||||||||| targets:1877   AUCCCGGGUCACCAAAUCAGCCCU   1900 Target Full Sequence	2.0	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT087775.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|||=||||||||*||||||| targets:324   AUCCCCGGUCACCAAACCAGCCCU   347 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0195K06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540503.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|*|=|||||||||||||||| targets:2315   AUCCCGGGUCACCAAAUCAGCCCU   2338 Target Full Sequence	2.0	PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538171.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   =||*|=||||||||||||||*||| targets:1   GUCCCUGAUCACCAAAUCAGACCU   24 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC109939824 (LOC109939824), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545246.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|=*||||||||||||||||* targets:152   AUCCCUAAUCACCAAAUCAGCCCG   175 Target Full Sequence	3.0	PREDICTED: Zea mays methyl binding domain113 (cl26423_1), transcript variant X7, mRNA	NA	coding protein	psRNATarget
EU943476.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   ||||=*||**|||||||||||||| targets:990   AUCUUGGAAAACCAAAUCAGCCCU   1013 Target Full Sequence	3.0	Zea mays clone 1625592 mRNA sequence	NA	coding protein	psRNATarget
BT066676.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|=*|*||||||||||||||| targets:1339   AUCCCUAACCACCAAAUCAGCCCU   1362 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0044C22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175907.1	ncRNA:24   UAGAGGCUAGUGGUUUAGUCGGGA   1   |||*|=*|*||||||||||||||| targets:1339   AUCCCUAACCACCAAAUCAGCCCU   1362 Target Full Sequence	3.0	Zea mays CCAAT-HAP2 transcription factor (CA2P12), mRNA	NA	coding protein	psRNATarget