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BaseInfo

ncRNA ID novel_zma_miR5199
Species Zea mays
Class miRNA
Genome position Chr3:122182621-122182671 [+]
Reference genome RefGen_v4
Source SRR2287165;SRR5451003
Length 22
Mature sequence(if miRNA) 30 - GGGAACGACGAGGCGGAGGAGA - 51
Stem-loop(if miRNA) --  G   AGA      ---G      U
  UC UCC   GCCUCG    UCCCUC U
  || |||   ||||||    |||||| A
  AG AGG   CGGAGC    AGGGGG G
AG  G   ---      AGCA      A
Stem-loop sequence UCGUCCAGAGCCUCGGUCCCUCUUAGAGGGGGAACGACGAGGCGGAGGAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU947960.1
ncRNA:22   AGAGGAGGCGGAGCAGCAAGGG   1
  ||||||||||||||||||||||
targets:165   UCUCCUCCGCCUCGUCGUUCCC   186

0.0 Zea mays clone 367471 mRNA sequence NA coding protein psRNATarget
EU954816.1
ncRNA:22   AGAGGAGGCGGAGCAGCAAGGG   1
  ||||||||||||||||||||=|
targets:164   UCUCCUCCGCCUCGUCGUUCUC   185

1.5 Zea mays clone 1486238 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU941393.1
ncRNA:22   AGAGGAGGCGGAGCAGCAAGGG   1
  ||||||||||||||||||||=|
targets:169   UCUCCUCCGCCUCGUCGUUCUC   190

1.5 Zea mays clone 1449058 mRNA sequence NA coding protein psRNATarget
XM_008665998.2
ncRNA:22   AG-AGGAGGCGGAGCAGCAAGGG   1
  ||-||||||||||||*|||||||
targets:278   UCGUCCUCCGCCUCGACGUUCCC   300

1.5 PREDICTED: Zea mays probable high-affinity nitrate transporter 2.4 (LOC103642821), mRNA NA coding protein psRNATarget
EU944546.1
ncRNA:22   AGA-GGAGGCGGAGCAGCAAGGG   1
  *||-|||||*|||||||||||||
targets:19   GCUGCCUCCUCCUCGUCGUUCCC   41

3.0 Zea mays clone 222138 mRNA sequence NA coding protein psRNATarget
NM_001346634.1
ncRNA:22   AGA-GGAGGCGGAGCAGCAAGGG   1
  *||-|||||*|||||||||||||
targets:52   GCUGCCUCCUCCUCGUCGUUCCC   74

3.0 Zea mays putative CCA tRNA nucleotidyltransferase 2 (LOC103640843), mRNA NA coding protein psRNATarget
XM_008664305.2
ncRNA:22   AGA-GGAGGCGGAGCAGCAAGGG   1
  *||-|||||*|||||||||||||
targets:80   GCUGCCUCCUCCUCGUCGUUCCC   102

3.0 PREDICTED: Zea mays putative CCA tRNA nucleotidyltransferase 2 (LOC103640843), transcript variant X1, mRNA NA coding protein psRNATarget
BT039627.1
ncRNA:22   AGAGGAGGCGGAGCAGCAAGGG   1
  *|||||||*|||||||*|||||
targets:43   CCUCCUCCUCCUCGUCCUUCCC   64

2.5 Zea mays full-length cDNA clone ZM_BFc0035C20 mRNA, complete cds NA coding protein psRNATarget
BT039634.1
ncRNA:22   AGAGGAGGCGGAGCAGCAAGGG   1
  *|||||||*|||||||*|||||
targets:49   CCUCCUCCUCCUCGUCCUUCCC   70

2.5 Zea mays full-length cDNA clone ZM_BFc0035I13 mRNA, complete cds NA coding protein psRNATarget
NM_001147320.1
ncRNA:22   AGAGGAGGCGGAGCAGCAAGGG   1
  *|||||||*|||||||*|||||
targets:49   CCUCCUCCUCCUCGUCCUUCCC   70

2.5 Zea mays Phosphomannomutase (umc2246), mRNA NA coding protein psRNATarget
EU965045.1
ncRNA:22   AGAGGAGGCGGAGCAGCAAGGG   1
  *|||||||*|||||||*|||||
targets:32   CCUCCUCCUCCUCGUCCUUCCC   53

2.5 Zea mays clone 283433 mRNA sequence NA coding protein psRNATarget
BT085518.1
ncRNA:22   AGAGGAGGCGGAGCAGCAAGGG   1
  *|||||||*|||||||*|||||
targets:35   CCUCCUCCUCCUCGUCCUUCCC   56

2.5 Zea mays full-length cDNA clone ZM_BFc0028K04 mRNA, complete cds NA coding protein psRNATarget
XM_008669275.2
ncRNA:22   AGAGGAGGCGGAGCAGCAAGGG   1
  *|||||||*|||||||*|||||
targets:45   CCUCCUCCUCCUCGUCCUUCCC   66

2.5 PREDICTED: Zea mays Phosphomannomutase (umc2246), transcript variant X3, mRNA NA coding protein psRNATarget
AY105630.1
ncRNA:22   AGAGGAGGCGGAGCAGCAAGGG   1
  *|||||||*|||||||*|||||
targets:42   CCUCCUCCUCCUCGUCCUUCCC   63

2.5 Zea mays PCO073836 mRNA sequence NA coding protein psRNATarget
XM_008669274.2
ncRNA:22   AGAGGAGGCGGAGCAGCAAGGG   1
  *|||||||*|||||||*|||||
targets:68   CCUCCUCCUCCUCGUCCUUCCC   89

2.5 PREDICTED: Zea mays Phosphomannomutase (umc2246), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008669273.2
ncRNA:22   AGAGGAGGCGGAGCAGCAAGGG   1
  *|||||||*|||||||*|||||
targets:68   CCUCCUCCUCCUCGUCCUUCCC   89

2.5 PREDICTED: Zea mays Phosphomannomutase (umc2246), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008666980.2
ncRNA:22   AGAGGAGGCGGAGCAGCAAGGG   1
  *|||||||*|||||||||*|||
targets:394   CCUCCUCCUCCUCGUCGUCCCC   415

2.5 PREDICTED: Zea mays 5'-AMP-activated protein kinase-related (LOC103643820), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020546866.1
ncRNA:22   AGAGGAGGCGGAGCAGCAAGGG   1
  *|||||||*|||||||||*|||
targets:394   CCUCCUCCUCCUCGUCGUCCCC   415

2.5 PREDICTED: Zea mays 5'-AMP-activated protein kinase-related (LOC103643820), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008666979.2
ncRNA:22   AGAGGAGGCGGAGCAGCAAGGG   1
  *|||||||*|||||||||*|||
targets:387   CCUCCUCCUCCUCGUCGUCCCC   408

2.5 PREDICTED: Zea mays 5'-AMP-activated protein kinase-related (LOC103643820), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008666978.2
ncRNA:22   AGAGGAGGCGGAGCAGCAAGGG   1
  *|||||||*|||||||||*|||
targets:389   CCUCCUCCUCCUCGUCGUCCCC   410

2.5 PREDICTED: Zea mays 5'-AMP-activated protein kinase-related (LOC103643820), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020546867.1
ncRNA:22   AGAGGAGGCGGAGCAGCAAGGG   1
  *|||||||*|||||||||*|||
targets:394   CCUCCUCCUCCUCGUCGUCCCC   415

2.5 PREDICTED: Zea mays 5'-AMP-activated protein kinase-related (LOC103643820), transcript variant X5, mRNA NA coding protein psRNATarget
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