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BaseInfo

ncRNA ID novel_zma_miR5197
Species Zea mays
Class miRNA
Genome position Chr8:164154709-164154834 [-]
Reference genome RefGen_v4
Source SRR1583941
Length 21
Mature sequence(if miRNA) 1 - CUGGUGCUCUUGAGGACGUUU - 21
Stem-loop(if miRNA) --    GA    C   - UU   A C  G     -------    UUCC     AUCUU          AU
  AUGU  UCAA GAG G  AGU G CG AUCGA       CGUG    GCAUC     CAGUUGCUGG  C
  ||||  |||| ||| |  ||| | || |||||       ||||    |||||     ||||||||||
  UGCA  AGUU CUC U  UCA C GU UAGCU       GCAC    CGUGG     GUUAGCGACU  U
UU    GG    -   G GG   C C  G     UAUAUCC    ----     ---CU          CU
Stem-loop sequence AUGUGAUCAACGAGGUUAGUAGCCGGAUCGACGUGUUCCGCAUCAUCUUCAGUUGCUGGAUCUUCUCAGCGAUUGUCGGUGCCACGCCUAUAUUCGAUGUGCCCACUGGUGCUCUUGAGGACGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008672308.2
ncRNA:21   UUUGCAGGAGUUCUCGUGGUC   1
  *||||*||||||*||||||||
targets:951   CAACGACCUCAACAGCACCAG   971

2.5 PREDICTED: Zea mays scarecrow-like protein 32 (LOC103647799), mRNA NA coding protein psRNATarget