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BaseInfo

ncRNA ID novel_zma_miR5195
Species Zea mays
Class miRNA
Genome position Chr3:21473524-21473592 [-]
Reference genome RefGen_v4
Source SRR2287165
Length 24
Mature sequence(if miRNA) 46 - AUGCGUUGCAACGGGGACAUAUAA - 69
Stem-loop(if miRNA) --A                         U  CG U
   UGCGUUGCAACGGGGACAUAUAAUA CA  G A
   ||||||||||||||||||||||||| ||  |
   ACGCAACGUUGCCUCUGUAUAUUAU GU  U A
GGC                         -  AU C
Stem-loop sequence AUGCGUUGCAACGGGGACAUAUAAUAUCACGGUAACUUAUGUAUUAUAUGUCUCCGUUGCAACGCACGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI407251.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||||||||||||||||||||
targets:58   UUAUAUGUCCCCGUUGCAACGCAU   81

0.0 Sequence 5376 from Patent EP2074227 NA coding protein psRNATarget
JB167712.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||||||||||||||||||||
targets:58   UUAUAUGUCCCCGUUGCAACGCAU   81

0.0 Sequence 5376 from Patent EP2559767 NA coding protein psRNATarget
LQ239381.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||||||||||||||||||||
targets:58   UUAUAUGUCCCCGUUGCAACGCAU   81

0.0 Sequence 5376 from Patent EP2985353 NA coding protein psRNATarget
XM_020546475.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||||||||||||||||||||
targets:1290   UUAUAUGUCCCCGUUGCAACGCAU   1313

0.0 PREDICTED: Zea mays uncharacterized LOC109943445 (LOC109943445), mRNA NA coding protein psRNATarget
JB169052.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  |||||||||=|||||||||||||*
targets:52   UUAUAUGUCUCCGUUGCAACGCAC   75

2.0 Sequence 6716 from Patent EP2559767 NA coding protein psRNATarget
LQ240721.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  |||||||||=|||||||||||||*
targets:52   UUAUAUGUCUCCGUUGCAACGCAC   75

2.0 Sequence 6716 from Patent EP2985353 NA coding protein psRNATarget
HI408591.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  |||||||||=|||||||||||||*
targets:52   UUAUAUGUCUCCGUUGCAACGCAC   75

2.0 Sequence 6716 from Patent EP2074227 NA coding protein psRNATarget
XM_020552623.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  |||||||||=|||||||||||||*
targets:835   UUAUAUGUCUCCGUUGCAACGCAC   858

2.0 PREDICTED: Zea mays uncharacterized LOC103653749 (LOC103653749), transcript variant X1, mRNA NA coding protein psRNATarget
EU974988.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||||=||||||||||||||*
targets:6   UUAUAUGUUCCCGUUGCAACGCAC   29

2.0 Zea mays clone 462361 mRNA sequence NA coding protein psRNATarget
EU973696.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  |||||||||=|||||||||||||*
targets:1020   UUAUAUGUCUCCGUUGCAACGCAC   1043

2.0 Zea mays clone 406768 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020546408.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||||=||||||||||||||*
targets:1234   UUAUAUGUUCCCGUUGCAACGCAC   1257

2.0 PREDICTED: Zea mays uncharacterized LOC103636628 (LOC103636628), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020542748.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  |||||||||=|||||||||||||*
targets:1184   UUAUAUGUCUCCGUUGCAACGCAC   1207

2.0 PREDICTED: Zea mays pre-rRNA-processing protein TSR1 homolog (LOC103635667), mRNA NA coding protein psRNATarget
BT067534.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  *|||||||=|||||||||||||||
targets:2437   AUAUAUGUUCCCGUUGCAACGCAU   2460

1.0 Zea mays full-length cDNA clone ZM_BFc0085M01 mRNA, complete cds NA coding protein psRNATarget
NM_001176192.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  *|||||||=|||||||||||||||
targets:2437   AUAUAUGUUCCCGUUGCAACGCAU   2460

1.0 Zea mays hypothetical protein (LOC100383544), mRNA NA coding protein psRNATarget
XM_008658389.2
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||||=||||||||||||||*
targets:4   UUAUAUGUUCCCGUUGCAACGCAC   27

2.0 PREDICTED: Zea mays probable inactive leucine-rich repeat receptor kinase XIAO (LOC103636020), mRNA NA coding protein psRNATarget
EZ084982.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||||==|||||||||||||*
targets:50   UUAUAUGUUUCCGUUGCAACGCAC   73

3.0 TSA: Zea mays contig20626, mRNA sequence NA coding protein psRNATarget
EZ085984.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||||==|||||||||||||*
targets:60   UUAUAUGUUUCCGUUGCAACGCAC   83

3.0 TSA: Zea mays contig21630, mRNA sequence NA coding protein psRNATarget
EZ065089.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||||==|||||||||||||*
targets:63   UUAUAUGUUUCCGUUGCAACGCAC   86

3.0 TSA: Zea mays contig00721, mRNA sequence NA coding protein psRNATarget
EU974737.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||||==|||||||||||||*
targets:738   UUAUAUGUUUCCGUUGCAACGCAA   761

3.0 Zea mays clone 457149 mRNA sequence NA coding protein psRNATarget
XM_020548644.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||||==|||||||||||||*
targets:679   UUAUAUGUUUCCGUUGCAACGCAC   702

3.0 PREDICTED: Zea mays mitochondrial adenine nucleotide transporter ADNT1-like (LOC103649350), transcript variant X3, mRNA NA coding protein psRNATarget
NM_001177118.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||||==|||||||||||||*
targets:78   UUAUAUGUUUCCGUUGCAACGCAC   101

3.0 Zea mays uncharacterized LOC100384622 (LOC100384622), mRNA NA coding protein psRNATarget
BT083780.2
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||||==|||||||||||||*
targets:78   UUAUAUGUUUCCGUUGCAACGCAC   101

3.0 Zea mays full-length cDNA clone ZM_BFb0039F15 mRNA, complete cds NA coding protein psRNATarget
BT069760.2
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||||==|||||||||||||*
targets:1462   UUAUAUGUUUCCGUUGCAACGCAC   1485

3.0 Zea mays full-length cDNA clone ZM_BFb0229D16 mRNA, complete cds NA coding protein psRNATarget
XM_020541369.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||||==|||||||||||||*
targets:3408   UUAUAUGUUUCCGUUGCAACGCAC   3431

3.0 PREDICTED: Zea mays uncharacterized LOC103633193 (LOC103633193), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020545825.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  *|||||||==|||||||||||||*
targets:3277   AUAUAUGUUUCCGUUGCAACGCAC   3300

3.0 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like (LOC103641135), transcript variant X9, mRNA NA coding protein psRNATarget
XM_020548245.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  |||*||||=||||||||||||||*
targets:4210   UUACAUGUUCCCGUUGCAACGCAC   4233

2.0 PREDICTED: Zea mays MADS-box transcription factor 31 (LOC103646272), mRNA NA coding protein psRNATarget
XM_020546600.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||*|=||||||||||||||*
targets:2386   UUAUAUAUUCCCGUUGCAACGCAC   2409

3.0 PREDICTED: Zea mays wall-associated receptor kinase 3-like (LOC103645132), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020546598.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||||||*|=||||||||||||||*
targets:2520   UUAUAUAUUCCCGUUGCAACGCAC   2543

3.0 PREDICTED: Zea mays wall-associated receptor kinase 3-like (LOC103645132), transcript variant X1, mRNA NA coding protein psRNATarget
JB169072.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  **|||*||||||||||||||||||
targets:34   ACAUAAGUCCCCGUUGCAACGCAU   57

1.0 Sequence 6736 from Patent EP2559767 NA coding protein psRNATarget
LQ240741.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  **|||*||||||||||||||||||
targets:34   ACAUAAGUCCCCGUUGCAACGCAU   57

1.0 Sequence 6736 from Patent EP2985353 NA coding protein psRNATarget
HI408611.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  **|||*||||||||||||||||||
targets:34   ACAUAAGUCCCCGUUGCAACGCAU   57

1.0 Sequence 6736 from Patent EP2074227 NA coding protein psRNATarget
EU949520.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  **||||||==|||||||||||||*
targets:340   CGAUAUGUUUCCGUUGCAACGCAC   363

3.0 Zea mays clone 422605 mRNA sequence NA coding protein psRNATarget
XM_020546143.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  ||*|||*|=||||||||||||||*
targets:3662   UUUUAUCUUCCCGUUGCAACGCAC   3685

3.0 PREDICTED: Zea mays uncharacterized LOC103642026 (LOC103642026), mRNA NA coding protein psRNATarget
XM_020539915.1
ncRNA:24   AAUAUACAGGGGCAACGUUGCGUA   1
  **|*||||==|||||||||||||*
targets:145   GGACAUGUUUCCGUUGCAACGCAC   168

3.0 PREDICTED: Zea mays aspartic proteinase oryzasin-1-like (LOC103631003), mRNA NA coding protein psRNATarget
XM_008655764.2
ncRNA:24   AAUA--UACAG-GGGCAACGUUGCGUA   1
  *|=|--=||||-||||||||||||||*
targets:615   CUGUCAGUGUCACCCGUUGCAACGCAC   641

3.0 PREDICTED: Zea mays UDP-glucuronic acid decarboxylase 5-like (LOC103634175), partial mRNA NA coding protein psRNATarget