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BaseInfo

ncRNA ID novel_zma_miR5193
Species Zea mays
Class miRNA
Genome position Chr4:215113257-215113379 [+]
Reference genome RefGen_v4
Source SRR2287164;SRR2089702
Length 24
Mature sequence(if miRNA) 100 - AAAUACGAUUUGUAGUGGCGGUUU - 123
Stem-loop(if miRNA) --          G      -         A C    C           C   ACUA      
  ACCGCCACUA AAAUCG AUUUCUACA G GGUU CUUAAGAAAAC GUC    GAAAUCA
  |||||||||| |||||| ||||||||| | |||| ||||||||||| |||    ||||||U
  UGGCGGUGAU UUUAGC UAAAGAUGU C CCAA GAAUUCUUUUG CAG    UUUUAGG
UU          G      A         A A    A           A   -ACA      
Stem-loop sequence ACCGCCACUAGAAAUCGAUUUCUACAAGCGGUUCCUUAAGAAAACCGUCACUAGAAAUCAUGGAUUUUACAGACAGUUUUCUUAAGAAACCACAUGUAGAAAUACGAUUUGUAGUGGCGGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
JB166343.1
ncRNA:24   UUUGGCGGUGAUGUUUAGCAUAAA   1
  ||||||||||||*|||||||||||
targets:38   AAACCGCCACUAGAAAUCGUAUUU   61

1.5 Sequence 4007 from Patent EP2559767 NA coding protein psRNATarget
HI405882.1
ncRNA:24   UUUGGCGGUGAUGUUUAGCAUAAA   1
  ||||||||||||*|||||||||||
targets:38   AAACCGCCACUAGAAAUCGUAUUU   61

1.5 Sequence 4007 from Patent EP2074227 NA coding protein psRNATarget
LQ238012.1
ncRNA:24   UUUGGCGGUGAUGUUUAGCAUAAA   1
  ||||||||||||*|||||||||||
targets:38   AAACCGCCACUAGAAAUCGUAUUU   61

1.5 Sequence 4007 from Patent EP2985353 NA coding protein psRNATarget
LQ235116.1
ncRNA:24   UUUGGCGGUGAUGUUUAGCAUAAA   1
  ||||||||||||*|||||||||||
targets:16   AAACCGCCACUAGAAAUCGUAUUU   39

1.5 Sequence 1111 from Patent EP2985353 NA coding protein psRNATarget
HI402986.1
ncRNA:24   UUUGGCGGUGAUGUUUAGCAUAAA   1
  ||||||||||||*|||||||||||
targets:16   AAACCGCCACUAGAAAUCGUAUUU   39

1.5 Sequence 1111 from Patent EP2074227 NA coding protein psRNATarget
JB163447.1
ncRNA:24   UUUGGCGGUGAUGUUUAGCAUAAA   1
  ||||||||||||*|||||||||||
targets:16   AAACCGCCACUAGAAAUCGUAUUU   39

1.5 Sequence 1111 from Patent EP2559767 NA coding protein psRNATarget