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BaseInfo

ncRNA ID novel_zma_miR5192
Species Zea mays
Class miRNA
Genome position Chr4:209127666-209127760 [+]
Reference genome RefGen_v4
Source SRR2287164
Length 24
Mature sequence(if miRNA) 72 - AUUUUCACUGUCGGUUUUAAAACA - 95
Stem-loop(if miRNA) -UUAAG       U                 CC   U    --G   C
      AAAACCG CAGUGAAAAUAACAUUU  GCU GUGG   UCU U
      ||||||| |||||||||||||||||  ||| ||||   |||
      UUUUGGC GUCACUUUUAUUGUAAA  UGA CACC   AGA U
ACAAAA       U                 CA   C    AAA   A
Stem-loop sequence UUAAGAAAACCGUCAGUGAAAAUAACAUUUCCGCUUGUGGGUCUCUUAAGAAAACCACCAGUACAAAUGUUAUUUUCACUGUCGGUUUUAAAACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001150001.1
ncRNA:24   ACAAAAUUUUGGCUGUCACUUUUA   1
  *||**||||||||*||||||||||
targets:656   CGUAAUAAAACCGCCAGUGAAAAU   679

1.5 Zea mays uncharacterized LOC100276144 (LOC100276144), mRNA NA coding protein psRNATarget
EU960305.1
ncRNA:24   ACAAAAUUUUGGCUGUCACUUUUA   1
  *||**||||||||*||||||||||
targets:656   CGUAAUAAAACCGCCAGUGAAAAU   679

1.5 Zea mays clone 223391 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU944461.1
ncRNA:24   ACAAAAUUUUGGCUGUCACUUUUA   1
  *||**||||||||*||||||||||
targets:897   CGUAAUAAAACCGCCAGUGAAAAU   920

1.5 Zea mays clone 219441 mRNA sequence NA coding protein psRNATarget