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BaseInfo

ncRNA ID novel_zma_miR5190
Species Zea mays
Class miRNA
Genome position Chr3:16407239-16407322 [+]
Reference genome RefGen_v4
Source SRR2287164;SRR2287165
Length 22
Mature sequence(if miRNA) 1 - CCGGAGGGGAUUGAAGGAGAUU - 22
Stem-loop(if miRNA) -     -        A     A                   A
 CCGGA GGGGAUUG AGGAG UUAAAUCCCCUCCUAGUCA A
 ||||| |||||||| ||||| |||||||||||||||||||
 GGUCU CCCCUAGC UCCUC AAUUUAGGGGAGGAUCAGU A
A     U        C     A                   A
Stem-loop sequence CCGGAGGGGAUUGAAGGAGAUUAAAUCCCCUCCUAGUCAAAAAUGACUAGGAGGGGAUUUAAACUCCUCCGAUCCCCUUCUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT065170.1
ncRNA:22   UUAGAGGAAGUUAGGGGAGGCC   1
  *|||*|||*|||||||||||||
targets:684   UAUCCCCUCCAAUCCCCUCCGG   705

2.0 Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds NA coding protein psRNATarget
XM_008670893.2
ncRNA:22   UUAGAGGAAGUUAGGGGAGGCC   1
  *|||*|||*|||||||||||||
targets:1564   UAUCCCCUCCAAUCCCCUCCGG   1585

2.0 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA NA coding protein psRNATarget
XM_008670890.2
ncRNA:22   UUAGAGGAAGUUAGGGGAGGCC   1
  *|||*|||*|||||||||||||
targets:1584   UAUCCCCUCCAAUCCCCUCCGG   1605

2.0 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008670892.2
ncRNA:22   UUAGAGGAAGUUAGGGGAGGCC   1
  *|||*|||*|||||||||||||
targets:1608   UAUCCCCUCCAAUCCCCUCCGG   1629

2.0 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008670891.2
ncRNA:22   UUAGAGGAAGUUAGGGGAGGCC   1
  *|||*|||*|||||||||||||
targets:1641   UAUCCCCUCCAAUCCCCUCCGG   1662

2.0 PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547043.1
ncRNA:22   UUAGAGGAAGUUAGGGGAGGCC   1
  =|||*||*|||||||||||||*
targets:3173   GAUCCCCCUCAAUCCCCUCCGA   3194

3.0 PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA NA coding protein psRNATarget