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BaseInfo

ncRNA ID novel_zma_miR5187
Species Zea mays
Class miRNA
Genome position Chr10:91067935-91067999 [+]
Reference genome RefGen_v4
Source SRR2287164;SRR2287165
Length 24
Mature sequence(if miRNA) 1 - GGCACUCGGCAAAGCAGACUUUGU - 24
Stem-loop(if miRNA) --   A             A          CG
  GGC CUCGGCAAAGCAG CUUUGUUGAG  C
  ||| ||||||||||||| ||||||||||  C
  CUG GAGCCGUUUCGUC GAAACGGCUC  G
AA   C             A          AC
Stem-loop sequence GGCACUCGGCAAAGCAGACUUUGUUGAGCGCCGCACUCGGCAAAGACUGCUUUGCCGAGCGUCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008654495.2
ncRNA:24   UGUUUCAGACGAAACGGCUCACGG   1
  =|||||*||*||||||||||||||
targets:8   GCAAAGCCUUCUUUGCCGAGUGCC   31

2.0 PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA NA coding protein psRNATarget
JB170493.1
ncRNA:24   UGUUUCAGACGAAACGGCUCACGG   1
  =|||||***|||||||||||||||
targets:3   GCAAAGAAGGCUUUGCCGAGUGCC   26

3.0 Sequence 8157 from Patent EP2559767 NA coding protein psRNATarget
HI410032.1
ncRNA:24   UGUUUCAGACGAAACGGCUCACGG   1
  =|||||***|||||||||||||||
targets:3   GCAAAGAAGGCUUUGCCGAGUGCC   26

3.0 Sequence 8157 from Patent EP2074227 NA coding protein psRNATarget
LQ242162.1
ncRNA:24   UGUUUCAGACGAAACGGCUCACGG   1
  =|||||***|||||||||||||||
targets:3   GCAAAGAAGGCUUUGCCGAGUGCC   26

3.0 Sequence 8157 from Patent EP2985353 NA coding protein psRNATarget
EZ087925.1
ncRNA:24   UGUUUCAGACGAAACGGCUCACGG   1
  =|||||***|||||||||||||||
targets:86   GCAAAGAAAGCUUUGCCGAGUGCC   109

3.0 TSA: Zea mays contig23571, mRNA sequence NA coding protein psRNATarget
BT067215.1
ncRNA:24   UGUUUCAGACGAAACGGCUCACGG   1
  =|||||***|||||||||||||||
targets:1185   GCAAAGAAAGCUUUGCCGAGUGCC   1208

3.0 Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds NA coding protein psRNATarget
BT064046.1
ncRNA:24   UGUUUCAGACGAAACGGCUCACGG   1
  =|||||***|||||||||||||||
targets:1322   GCAAAGAAAGCUUUGCCGAGUGCC   1345

3.0 Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds NA coding protein psRNATarget
NM_001175109.1
ncRNA:24   UGUUUCAGACGAAACGGCUCACGG   1
  =|||||***|||||||||||||||
targets:1322   GCAAAGAAAGCUUUGCCGAGUGCC   1345

3.0 Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA NA coding protein psRNATarget
JB170420.1
ncRNA:24   UGUUUCAGACGAAACGGCUCACGG   1
  |*||||***|||||||||||||||
targets:60   AAAAAGCAAGCUUUGCCGAGUGCC   83

3.0 Sequence 8084 from Patent EP2559767 NA coding protein psRNATarget
LQ242089.1
ncRNA:24   UGUUUCAGACGAAACGGCUCACGG   1
  |*||||***|||||||||||||||
targets:60   AAAAAGCAAGCUUUGCCGAGUGCC   83

3.0 Sequence 8084 from Patent EP2985353 NA coding protein psRNATarget
HI409959.1
ncRNA:24   UGUUUCAGACGAAACGGCUCACGG   1
  |*||||***|||||||||||||||
targets:60   AAAAAGCAAGCUUUGCCGAGUGCC   83

3.0 Sequence 8084 from Patent EP2074227 NA coding protein psRNATarget