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BaseInfo

ncRNA ID novel_zma_miR5185
Species Zea mays
Class miRNA
Genome position Chr3:125418972-125419027 [+]
Reference genome RefGen_v4
Source SRR2287164;SRR2287165
Length 21
Mature sequence(if miRNA) 1 - AUCGGAGUGGAUUGAGGGGGA - 21
Stem-loop(if miRNA) --       U                AA
  AUCGGAG GGAUUGAGGGGGAAAU  A
  ||||||| ||||||||||||||||
  UAGCCUC CCUAACUCCCCCUUUA  C
CC       C                AU
Stem-loop sequence AUCGGAGUGGAUUGAGGGGGAAAUAAACUAAUUUCCCCCUCAAUCCCCUCCGAUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020551688.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  |||||||||||||*|||||||
targets:2150   UCCCCCUCAAUCCCCUCCGAU   2170

1.5 PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547043.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  |||||||||||||*|||||||
targets:3175   UCCCCCUCAAUCCCCUCCGAU   3195

1.5 PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA NA coding protein psRNATarget
JB166853.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  |=|||||||||||*|||||||
targets:50   UUCCCCUCAAUCCUCUCCGAU   70

1.5 Sequence 4517 from Patent EP2559767 NA coding protein psRNATarget
HI406392.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  |=|||||||||||*|||||||
targets:50   UUCCCCUCAAUCCUCUCCGAU   70

1.5 Sequence 4517 from Patent EP2074227 NA coding protein psRNATarget
LQ238522.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  |=|||||||||||*|||||||
targets:50   UUCCCCUCAAUCCUCUCCGAU   70

1.5 Sequence 4517 from Patent EP2985353 NA coding protein psRNATarget
NM_001352049.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  |=|||||||||||*|||||||
targets:549   UUCCCCUCAAUCCUCUCCGAU   569

1.5 Zea mays uncharacterized LOC100284194 (pco105859), transcript variant 2, mRNA NA coding protein psRNATarget
XM_020547779.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  |=|||||||||||*|||||||
targets:577   UUCCCCUCAAUCCUCUCCGAU   597

1.5 PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X1, mRNA NA coding protein psRNATarget
XM_020547780.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  |=|||||||||||*|||||||
targets:579   UUCCCCUCAAUCCUCUCCGAU   599

1.5 PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020547439.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  |||||=||||||||||||*||
targets:3911   UCCCCUUCAAUCCACUCCAAU   3931

2.5 PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA NA coding protein psRNATarget
JB166594.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  *||*||||||||||||||*||
targets:86   ACCACCUCAAUCCACUCCAAU   106

2.5 Sequence 4258 from Patent EP2559767 NA coding protein psRNATarget
LQ238263.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  *||*||||||||||||||*||
targets:86   ACCACCUCAAUCCACUCCAAU   106

2.5 Sequence 4258 from Patent EP2985353 NA coding protein psRNATarget
HI406133.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  *||*||||||||||||||*||
targets:86   ACCACCUCAAUCCACUCCAAU   106

2.5 Sequence 4258 from Patent EP2074227 NA coding protein psRNATarget
HI406953.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  *|||*|||||||||||||*||
targets:5   ACCCACUCAAUCCACUCCAAU   25

2.5 Sequence 5078 from Patent EP2074227 NA coding protein psRNATarget
LQ239083.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  *|||*|||||||||||||*||
targets:5   ACCCACUCAAUCCACUCCAAU   25

2.5 Sequence 5078 from Patent EP2985353 NA coding protein psRNATarget
JB167414.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  *|||*|||||||||||||*||
targets:5   ACCCACUCAAUCCACUCCAAU   25

2.5 Sequence 5078 from Patent EP2559767 NA coding protein psRNATarget
EU943240.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  *||*||||||||||||||*||
targets:573   ACCACCUCAAUCCACUCCAAU   593

2.5 Zea mays clone 1589496 mRNA sequence NA coding protein psRNATarget
BT055408.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  *|||*|||||||||||||*||
targets:811   ACCCACUCAAUCCACUCCAAU   831

2.5 Zea mays full-length cDNA clone ZM_BFb0147G07 mRNA, complete cds NA coding protein psRNATarget
NM_001152975.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  *|||*|||||||||||||*||
targets:811   ACCCACUCAAUCCACUCCAAU   831

2.5 Zea mays glycosyltransferase family protein 28 (IDP1988), mRNA NA coding protein psRNATarget
EU965489.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  *||*||||||||||||||*||
targets:1111   ACCACCUCAAUCCACUCCAAU   1131

2.5 Zea mays clone 286392 mRNA sequence NA coding protein psRNATarget
XM_008649521.2
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  *|||*|||||||||||||*||
targets:863   ACCCACUCAAUCCACUCCAAU   883

2.5 PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008649520.2
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  *|||*|||||||||||||*||
targets:892   ACCCACUCAAUCCACUCCAAU   912

2.5 PREDICTED: Zea mays glycosyltransferase family protein 28 (IDP1988), transcript variant X1, mRNA NA coding protein psRNATarget
EU960447.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  *||*||||||||||||||*||
targets:1215   ACCACCUCAAUCCACUCCAAU   1235

2.5 Zea mays clone 224969 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001150023.1
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  *||*||||||||||||||*||
targets:1215   ACCACCUCAAUCCACUCCAAU   1235

2.5 Zea mays uncharacterized LOC100276173 (LOC100276173), mRNA NA coding protein psRNATarget
XM_008667020.2
ncRNA:21   AGGGGGAGUUAGGUGAGGCUA   1
  *||*||||||||||||||*||
targets:2080   ACCACCUCAAUCCACUCCAAU   2100

2.5 PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103643852), mRNA NA coding protein psRNATarget
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