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BaseInfo

ncRNA ID novel_zma_miR5183
Species Zea mays
Class miRNA
Genome position Chr3:84161885-84161963 [+]
Reference genome RefGen_v4
Source SRR2287164
Length 23
Mature sequence(if miRNA) 57 - GGGCUUAUUUUCGGCGGCUUCUG - 79
Stem-loop(if miRNA) --                    G   G            
  GAAGCCGCCGAAAAUAAGCC UUU CCGCCGAAAAUAG
  |||||||||||||||||||| ||| ||||||||||||C
  CUUCGGCGGCUUUUAUUCGG GAA GGCGGCUUUUAUU
GU                    G   G            
Stem-loop sequence GAAGCCGCCGAAAAUAAGCCGUUUGCCGCCGAAAAUAGCUUAUUUUCGGCGGGAAGGGGCUUAUUUUCGGCGGCUUCUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI407204.1
ncRNA:23   GUCUUCGGCGGCUUUUAUUCGGG   1
  ||*|||||||||||||||||*||
targets:4   CAAAAGCCGCCGAAAAUAAGGCC   26

1.5 Sequence 5329 from Patent EP2074227 NA coding protein psRNATarget
LQ239334.1
ncRNA:23   GUCUUCGGCGGCUUUUAUUCGGG   1
  ||*|||||||||||||||||*||
targets:4   CAAAAGCCGCCGAAAAUAAGGCC   26

1.5 Sequence 5329 from Patent EP2985353 NA coding protein psRNATarget
JB167665.1
ncRNA:23   GUCUUCGGCGGCUUUUAUUCGGG   1
  ||*|||||||||||||||||*||
targets:4   CAAAAGCCGCCGAAAAUAAGGCC   26

1.5 Sequence 5329 from Patent EP2559767 NA coding protein psRNATarget
XM_008652299.2
ncRNA:23   GUCUUCGGCGGCUUUUAUUCGGG   1
  ||*||*|||=||||||||||||=
targets:1072   CAUAAUCCGUCGAAAAUAAGCCU   1094

3.0 PREDICTED: Zea mays putative bZIP transcription factor superfamily protein (LOC103631376), mRNA NA coding protein psRNATarget
XM_020541607.1
ncRNA:23   GUCUUCGGCGGCUUUUAUUCGGG   1
  *||*|||||||||||||||*||=
targets:718   GAGCAGCCGCCGAAAAUAAUCCU   740

2.5 PREDICTED: Zea mays spidroin-1-like (LOC109941115), mRNA NA coding protein psRNATarget
BT065567.1
ncRNA:23   GUCUUCGGCGGCUUUUAUUCGGG   1
  ||**||||||||||||||||*|=
targets:1029   CACCAGCCGCCGAAAAUAAGGCU   1051

2.5 Zea mays full-length cDNA clone ZM_BFb0298D06 mRNA, complete cds NA coding protein psRNATarget
BT065567.1
ncRNA:23   GUCUUCGGCGGCUUUUAUUCGGG   1
  ||**||||||||||||||||*|=
targets:1070   CACCAGCCGCCGAAAAUAAGGCU   1092

2.5 Zea mays full-length cDNA clone ZM_BFb0298D06 mRNA, complete cds NA coding protein psRNATarget