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BaseInfo

ncRNA ID novel_zma_miR5182
Species Zea mays
Class miRNA
Genome position Chr7:43000015-43000115 [-]
Reference genome RefGen_v4
Source SRR1618882
Length 21
Mature sequence(if miRNA) 81 - GGAGAUGAUCUUAUGUGAUGU - 101
Stem-loop(if miRNA) --   G      UU  G      GA   UG AU  A      UUGU        A
  GGA AUGAUC  AU UGAUGU  UGA  G  AG UUAACU    UGGAUAUU G
  ||| ||||||  || ||||||  |||  |  || ||||||    ||||||||
  UCU UACUAG  UA AUUAUA  GUU  U  UC AAUUGA    AUUUAUAG A
GG   G      --  G      -G   GU --  A      ----        U
Stem-loop sequence GGAGAUGAUCUUAUGUGAUGUGAUGAUGGAUAGAUUAACUUUGUUGGAUAUUAGAUGAUAUUUAAGUUAAACUUUGUUGGAUAUUAGAUGAUCAUGUCUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ094897.1
ncRNA:21   UGUAGUGUAUUCUAGUAGAGG   1
  |||||||||||||||||||=|
targets:29   ACAUCACAUAAGAUCAUCUUC   49

1.5 TSA: Zea mays contig30549, mRNA sequence NA coding protein psRNATarget