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BaseInfo

ncRNA ID	novel_zma_miR5178
Species	Zea mays
Class	miRNA
Genome position	Chr10:73523291-73523506 [+]
Reference genome	RefGen_v4
Source	SRR2287164;SRR2089704
Length	21
Mature sequence(if miRNA)	196 - ACCGGUUCACCAUCGUCUGGC - 216
Stem-loop(if miRNA)	--                A       A                                    C    G   G                    G  G  G       U   CAGACGAUGGUGAGCC GUGUACU UGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCC GGCU CAU UGUGUGCUUCUCUUCUCUUA GU GG UGCUAAG G   |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||| || || |||||||   GUCUGCUACCACUUGG CACAUGA ACAGGCCUACACACCAGUGUUUUAAAUUUCGGCGGG CCGA GUA ACACGCGAAGAGAAGAGAAU CA CC AUGAUUC A CG                C       G                                    A    A   G                    A  G  G       U
Stem-loop sequence	CAGACGAUGGUGAGCCAGUGUACUAUGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCCGGCUGCAUGUGUGUGCUUCUCUUCUCUUAGGUGGGGUGCUAAGUGAUCUUAGUAGCCGACAUAAGAGAAGAGAAGCGCACAGAUGAAGCCAGGGCGGCUUUAAAUUUUGUGACCACACAUCCGGACAGAGUACACCGGUUCACCAUCGUCUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020538582.1	ncRNA:21   CGGUCUGCUACCACUUGGCCA   1   |||||||||||||||=||||| targets:3205   GCCAGACGAUGGUGAGCCGGU   3225 Target Full Sequence	1.5	PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538581.1	ncRNA:21   CGGUCUGCUACCACUUGGCCA   1   |||||||||||||||=||||| targets:3343   GCCAGACGAUGGUGAGCCGGU   3363 Target Full Sequence	1.5	PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT054171.1	ncRNA:21   CGGUCUGCUACCACUUGGCCA   1   ||==|*||||||||||||||| targets:1382   GCUGGUCGAUGGUGAACCGGU   1402 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0148C07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152406.1	ncRNA:21   CGGUCUGCUACCACUUGGCCA   1   ||==|*||||||||||||||| targets:1382   GCUGGUCGAUGGUGAACCGGU   1402 Target Full Sequence	3.0	Zea mays uncharacterized LOC100279393 (LOC100279393), mRNA	NA	coding protein	psRNATarget