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BaseInfo

ncRNA ID	novel_zma_miR5176
Species	Zea mays
Class	miRNA
Genome position	Chr3:99075311-99075400 [-]
Reference genome	RefGen_v4
Source	SRR2287164
Length	24
Mature sequence(if miRNA)	67 - GGAUUGAAGGGGAUUGGAGGGGAU - 90
Stem-loop(if miRNA)	--GG           U  GA         A      CA  G   A     AUUGAAGGGGA UG  GGGGAUUAA UCCCUU  UA UCA A     ||||||||||| ||  ||||||||| ||||||  || |||     UAACUUUCCCU AC  CCCCUAAUU AGGGGA  AU AGU A UCUA           U  UC         A      UG  A   U
Stem-loop sequence	GGAUUGAAGGGGAUUGGAGGGGAUUAAAUCCCUUCAUAGUCAAAAUUGAAUAGUAGGGGAAUUAAUCCCCCUCAUUCCCUUUCAAUAUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238074.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   |||=|||||||||||||||=|||| targets:90   AUCUCCUCCAAUCCCCUUCGAUCC   113 Target Full Sequence	1.5	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
JB166408.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   |||=|||||||||||||||=|||| targets:90   AUCUCCUCCAAUCCCCUUCGAUCC   113 Target Full Sequence	1.5	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   |||=|||||||||||||||=|||| targets:90   AUCUCCUCCAAUCCCCUUCGAUCC   113 Target Full Sequence	1.5	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
JB166405.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   |||=|||||||||||||||=|||| targets:90   AUCUCCUCCAAUCCCCUUCGAUCC   113 Target Full Sequence	1.5	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
HI405947.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   |||=|||||||||||||||=|||| targets:90   AUCUCCUCCAAUCCCCUUCGAUCC   113 Target Full Sequence	1.5	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
HI405944.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   |||=|||||||||||||||=|||| targets:90   AUCUCCUCCAAUCCCCUUCGAUCC   113 Target Full Sequence	1.5	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
EZ069159.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   *|||=||||||||||||||||||| targets:57   UUCCUCUCCAAUCCCCUUCAAUCC   80 Target Full Sequence	0.0	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   ||||||||||||||||*||||||| targets:3272   AUCCCCUCCAAUCCCCCUCAAUCC   3295 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget
BT067503.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   ||||||||||||||||*||||||| targets:1593   AUCCCCUCCAAUCCCCCUCAAUCC   1616 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0066C23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176181.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   ||||||||||||||||*||||||| targets:1593   AUCCCCUCCAAUCCCCCUCAAUCC   1616 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383533 (LOC100383533), mRNA	NA	coding protein	psRNATarget
EZ083462.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   |||||=||||||||||*||||||| targets:32   AUCCCUUCCAAUCCCCCUCAAUCC   55 Target Full Sequence	2.5	TSA: Zea mays contig19106, mRNA sequence	NA	coding protein	psRNATarget
BT069589.2	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   ||||=|*||||||||||||||||| targets:1022   AUCCUCACCAAUCCCCUUCAAUCC   1045 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
JB163452.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   |||=||*=|||||||||||||||| targets:83   AUCUCCCUCAAUCCCCUUCAAUCC   106 Target Full Sequence	2.0	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   |||=||*=|||||||||||||||| targets:83   AUCUCCCUCAAUCCCCUUCAAUCC   106 Target Full Sequence	2.0	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
HI402991.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   |||=||*=|||||||||||||||| targets:83   AUCUCCCUCAAUCCCCUUCAAUCC   106 Target Full Sequence	2.0	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
EU967673.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   |||=*||||=|||||||||||||| targets:945   AUCUGCUCCGAUCCCCUUCAAUCC   968 Target Full Sequence	1.0	Zea mays clone 305238 mRNA sequence	NA	coding protein	psRNATarget
EU942791.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   |||=|||||=|*|||||||||||| targets:586   AUCUCCUCCGACCCCCUUCAAUCC   609 Target Full Sequence	2.5	Zea mays clone 1536943 mRNA sequence	NA	coding protein	psRNATarget
XM_008662014.2	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   |||=*||||=|||||||||||||| targets:1071   AUCUGCUCCGAUCCCCUUCAAUCC   1094 Target Full Sequence	1.0	PREDICTED: Zea mays CASP-like protein 4B1 (LOC103639253), mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   ||||*||||||||=|||||||||= targets:3083   AUCCGCUCCAAUCUCCUUCAAUCU   3106 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   ||||*||||||||=|||||||||= targets:3096   AUCCGCUCCAAUCUCCUUCAAUCU   3119 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   ||||*||||||||=|||||||||= targets:3127   AUCCGCUCCAAUCUCCUUCAAUCU   3150 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   ||||*|||||||||||*||||||| targets:3920   AUCCACUCCAAUCCCCCUCAAUCC   3943 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB170124.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   *|||||*==||||||||||||||| targets:66   UUCCCCCUUAAUCCCCUUCAAUCC   89 Target Full Sequence	3.0	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   *|||||*==||||||||||||||| targets:66   UUCCCCCUUAAUCCCCUUCAAUCC   89 Target Full Sequence	3.0	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   *|||||*==||||||||||||||| targets:66   UUCCCCCUUAAUCCCCUUCAAUCC   89 Target Full Sequence	3.0	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
EZ111591.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   *|||=||||*||||||||||||=| targets:73   UUCCUCUCCCAUCCCCUUCAAUUC   96 Target Full Sequence	2.5	TSA: Zea mays contig47252, mRNA sequence	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   *|||||*==||||||||||||||| targets:820   UUCCCCCUUAAUCCCCUUCAAUCC   843 Target Full Sequence	3.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   *|||||*==||||||||||||||| targets:859   UUCCCCCUUAAUCCCCUUCAAUCC   882 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   *|||||*==||||||||||||||| targets:864   UUCCCCCUUAAUCCCCUUCAAUCC   887 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   *|||||*==||||||||||||||| targets:864   UUCCCCCUUAAUCCCCUUCAAUCC   887 Target Full Sequence	3.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
JB166342.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   ||====|||||||||*|||||||| targets:86   AUUUUUUCCAAUCCCAUUCAAUCC   109 Target Full Sequence	2.5	Sequence 4006 from Patent EP2559767	NA	coding protein	psRNATarget
HI405881.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   ||====|||||||||*|||||||| targets:86   AUUUUUUCCAAUCCCAUUCAAUCC   109 Target Full Sequence	2.5	Sequence 4006 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238011.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   ||====|||||||||*|||||||| targets:86   AUUUUUUCCAAUCCCAUUCAAUCC   109 Target Full Sequence	2.5	Sequence 4006 from Patent EP2985353	NA	coding protein	psRNATarget
AY112376.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   ||||*=||||||||*||||||||| targets:385   AUCCAUUCCAAUCCACUUCAAUCC   408 Target Full Sequence	2.5	Zea mays CL41055_1 mRNA sequence	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   |*|||||=||||||||*||||||| targets:842   AACCCCUUCAAUCCCCCUCAAUCC   865 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
BT085111.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   |||*|*|||||||||||||=|||| targets:1404   AUCACAUCCAAUCCCCUUCGAUCC   1427 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020543502.1	ncRNA:24   UAGG--GGAGGUUAGGGGAAGUUAGG   1   ||==--=|||=|||||||||=||||| targets:1767   AUUUAUUCUCUAAUCCCCUUUAAUCC   1792 Target Full Sequence	2.5	PREDICTED: Zea mays putative ubiquitin-conjugating enzyme family (LOC100194405), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI405833.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   *|====|||||||||*|||||||| targets:87   UUUUUUUCCAAUCCCAUUCAAUCC   110 Target Full Sequence	2.5	Sequence 3958 from Patent EP2074227	NA	coding protein	psRNATarget
JB166294.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   *|====|||||||||*|||||||| targets:87   UUUUUUUCCAAUCCCAUUCAAUCC   110 Target Full Sequence	2.5	Sequence 3958 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237963.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   *|====|||||||||*|||||||| targets:87   UUUUUUUCCAAUCCCAUUCAAUCC   110 Target Full Sequence	2.5	Sequence 3958 from Patent EP2985353	NA	coding protein	psRNATarget
EU944907.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   *|====|||||||||*|||||||| targets:336   UUUUUUUCCAAUCCCAUUCAAUCC   359 Target Full Sequence	2.5	Zea mays clone 235115 mRNA sequence	NA	coding protein	psRNATarget
NM_001196032.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   =|=|*|||||*|||=||||||||| targets:371   GUUCGCUCCAUUCCUCUUCAAUCC   394 Target Full Sequence	2.5	Zea mays uncharacterized LOC100501270 (LOC100501270), mRNA	NA	coding protein	psRNATarget
BT084925.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   =|=|*|||||*|||=||||||||| targets:371   GUUCGCUCCAUUCCUCUUCAAUCC   394 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0207G04 mRNA, complete cds	NA	coding protein	psRNATarget
EU949726.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   =|=|*|||||*|||=||||||||| targets:581   GUUCGCUCCAUUCCUCUUCAAUCC   604 Target Full Sequence	2.5	Zea mays clone 442532 mRNA sequence	NA	coding protein	psRNATarget
XM_020539146.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   =|=|*|||||*|||=||||||||| targets:5288   GUUCGCUCCAUUCCUCUUCAAUCC   5311 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100501270 (LOC100501270), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539145.1	ncRNA:24   UAGGGGAGGUUAGGGGAAGUUAGG   1   =|=|*|||||*|||=||||||||| targets:5395   GUUCGCUCCAUUCCUCUUCAAUCC   5418 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100501270 (LOC100501270), transcript variant X1, mRNA	NA	coding protein	psRNATarget