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BaseInfo

ncRNA ID	novel_zma_miR5175
Species	Zea mays
Class	miRNA
Genome position	Chr3:34840440-34840494 [+]
Reference genome	RefGen_v4
Source	SRR2287164
Length	24
Mature sequence(if miRNA)	1 - UCUAUGAUUUGUGGGUCUGAUGGC - 24
Stem-loop(if miRNA)	----UC           G U  GA    A       UAUGAUUUGUG G CU  UGGC U       ||||||||||| | ||  |||| A       AUACUAAACAC C GA  GCCG U ACGGUA           A -  -A    U
Stem-loop sequence	UCUAUGAUUUGUGGGUCUGAUGGCAUAUUGCCGAAGCACACAAAUCAUAAUGGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU970008.1	ncRNA:24   CGGUAGUCUGGGUGUUUAGUAUCU   1   ||||||=||||||||||||||||| targets:1579   GCCAUCGGACCCACAAAUCAUAGA   1602 Target Full Sequence	1.0	Zea mays clone 338473 mRNA sequence	NA	coding protein	psRNATarget
XM_008680463.2	ncRNA:24   CGGUAGUCUGGGUGUUUAGUAUCU   1   ||||||=||||||||||||||||| targets:1681   GCCAUCGGACCCACAAAUCAUAGA   1704 Target Full Sequence	1.0	PREDICTED: Zea mays serine decarboxylase 1 (LOC103653609), mRNA	NA	coding protein	psRNATarget
XM_020550876.1	ncRNA:24   CGGUAGUCUGGGUGUUUAGUAUCU   1   ||||||=||||||||||||||||| targets:96   GCCAUCGGACCCACAAAUCAUAGA   119 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103650478 (LOC103650478), mRNA	NA	coding protein	psRNATarget
BT063154.1	ncRNA:24   CGGUAGUCUGGGUGUUUAGUAUCU   1   ||||||=|=||||||||||||||| targets:639   GCCAUCGGGCCCACAAAUCAUAGA   662 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0031P16 mRNA, complete cds	NA	coding protein	psRNATarget
EU953112.1	ncRNA:24   CGGUAGUCUGGGUGUUUAGUAUCU   1   ||||||=|=||||||||||||||| targets:655   GCCAUCGGGCCCACAAAUCAUAGA   678 Target Full Sequence	2.0	Zea mays clone 1383350 wound-induced protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153569.1	ncRNA:24   CGGUAGUCUGGGUGUUUAGUAUCU   1   ||||||=|=||||||||||||||| targets:655   GCCAUCGGGCCCACAAAUCAUAGA   678 Target Full Sequence	2.0	Zea mays wound-induced protein (LOC100280651), mRNA	NA	coding protein	psRNATarget
DQ245028.1	ncRNA:24   CGGUAGUCUGGGUGUUUAGUAUCU   1   ||||||=|=||||||||||||||| targets:654   GCCAUCGGGCCCACAAAUCAUAGA   677 Target Full Sequence	2.0	Zea mays clone 12350 mRNA sequence	NA	coding protein	psRNATarget
XM_008655066.2	ncRNA:24   CGGUAGUCUGGGUGUUUAGUAUCU   1   ||=|||=|||*||||||||||||| targets:1794   GCUAUCGGACACACAAAUCAUAGA   1817 Target Full Sequence	2.0	PREDICTED: Zea mays putative zinc finger CCCH domain-containing protein 51 (LOC103633361), mRNA	NA	coding protein	psRNATarget
XM_008651428.2	ncRNA:24   CGGUAGUCUGGGUGUUUAGUAUCU   1   ****||||=||||||||||||||| targets:80   AGACUCAGGCCCACAAAUCAUAGA   103 Target Full Sequence	1.0	PREDICTED: Zea mays guanosine nucleotide diphosphate dissociation inhibitor 2 (LOC103630368), mRNA	NA	coding protein	psRNATarget
XM_008646774.2	ncRNA:20   AGUCUGGGUGUUUAGUAUCU   1   |=||==|||||||||||||| targets:1   UUAGGUCCACAAAUCAUAGA   20 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g61360 (LOC103626368), mRNA	NA	coding protein	psRNATarget