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BaseInfo

ncRNA ID	novel_zma_miR5172
Species	Zea mays
Class	miRNA
Genome position	Chr7:52927424-52927595 [-]
Reference genome	RefGen_v4
Source	SRR1618882
Length	22
Mature sequence(if miRNA)	1 - CCUAGAAACCAAACACCCUCUU - 22
Stem-loop(if miRNA)	--                    ---------AAC  AA                C     CU        G      C               GAGGGUGUUUGGUUUCUAGG            GU  CUCUAUUUUAUUUCAU UUAGU  UUAAAUUG UAAAUA GGAAACUGAAAUA   ||||||||||||||||||||            ||  |||||||||||||||| |||||  |||||||| |||||| ||||||||||||G   CUCCCACAAACCAAAGAUCC            CA  GAGGUAAAAUGAGGUA AAUCA  GAUUUAAC GUUUAU CUUUUGAUUUUGU UU                    CUAAUUAAAAAU  GA                A     AG        A      A
Stem-loop sequence	GAGGGUGUUUGGUUUCUAGGAACGUAACUCUAUUUUAUUUCAUCUUAGUCUUUAAAUUGGUAAAUACGGAAACUGAAAUAGUGUUUUAGUUUUCAUAUUUGACAAUUUAGGAACUAAAAUGGAGUAAAAUGGAGAGACUAAAAAUUAAUCCCUAGAAACCAAACACCCUCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ052166.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=|||||||||||||||||| targets:746   AAGGGGGUGUUUGGUUUCUAGG   767 Target Full Sequence	1.0	TSA: Zea mays contig53286, mRNA sequence	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=|||||||||||||||||| targets:546   AAGGGGGUGUUUGGUUUCUAGG   567 Target Full Sequence	1.0	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
DQ244473.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=|||||||||||||||||| targets:961   AAGGGGGUGUUUGGUUUCUAGG   982 Target Full Sequence	1.0	Zea mays clone 8025 mRNA sequence	NA	coding protein	psRNATarget
XM_008650759.2	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=|||||||||||||||||| targets:1131   AAGGGGGUGUUUGGUUUCUAGG   1152 Target Full Sequence	1.0	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008650758.2	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=|||||||||||||||||| targets:1140   AAGGGGGUGUUUGGUUUCUAGG   1161 Target Full Sequence	1.0	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008650753.2	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=|||||||||||||||||| targets:1143   AAGGGGGUGUUUGGUUUCUAGG   1164 Target Full Sequence	1.0	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008650754.2	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=|||||||||||||||||| targets:1149   AAGGGGGUGUUUGGUUUCUAGG   1170 Target Full Sequence	1.0	PREDICTED: Zea mays MADS-box transcription factor 30 (LOC103629660), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020542419.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=|||||||||||||||||| targets:2138   AAGGGGGUGUUUGGUUUCUAGG   2159 Target Full Sequence	1.0	PREDICTED: Zea mays ADP,ATP carrier protein 2, chloroplastic (LOC103637385), mRNA	NA	coding protein	psRNATarget
EU942443.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |=|=|||||||||||||||||| targets:459   AGGGGGGUGUUUGGUUUCUAGG   480 Target Full Sequence	1.0	Zea mays clone 1501876 mRNA sequence	NA	coding protein	psRNATarget
EZ060524.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=|||||||||||||||||* targets:38   AAGGGGGUGUUUGGUUUCUAGU   59 Target Full Sequence	2.0	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
BT087095.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *||=|||||||||||||||||| targets:549   UAGGGGGUGUUUGGUUUCUAGG   570 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFa0069E04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *||=|||||||||||||||||| targets:809   UAGGGGGUGUUUGGUUUCUAGG   830 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *||=|||||||||||||||||| targets:809   UAGGGGGUGUUUGGUUUCUAGG   830 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
EU956227.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *||=|||||||||||||||||| targets:1236   UAGGGGGUGUUUGGUUUCUAGG   1257 Target Full Sequence	1.0	Zea mays clone 1559264 mRNA sequence	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *||=|||||||||||||||||| targets:1916   UAGGGGGUGUUUGGUUUCUAGG   1937 Target Full Sequence	1.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001150110.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *||||||||||||||||||||* targets:533   UAGAGGGUGUUUGGUUUCUAGA   554 Target Full Sequence	1.0	Zea mays hypothetical protein (LOC103639532), mRNA	NA	coding protein	psRNATarget
EU961152.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *||||||||||||||||||||* targets:533   UAGAGGGUGUUUGGUUUCUAGA   554 Target Full Sequence	1.0	Zea mays clone 232918 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ111881.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *||=|||||||||||||=|||| targets:78   CAGGGGGUGUUUGGUUUUUAGG   99 Target Full Sequence	2.5	TSA: Zea mays contig47542, mRNA sequence	NA	coding protein	psRNATarget
NM_001313850.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *=|=|||||||||||||||||| targets:1133   UGGGGGGUGUUUGGUUUCUAGG   1154 Target Full Sequence	1.0	Zea mays voltage-gated potassium channel beta subunit (LOC100282429), mRNA	NA	coding protein	psRNATarget
BT088358.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *=|=|||||||||||||||||| targets:1133   UGGGGGGUGUUUGGUUUCUAGG   1154 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0155C19 mRNA, complete cds	NA	coding protein	psRNATarget
BT085047.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *=|=|||||||||||||||||| targets:1187   UGGGGGGUGUUUGGUUUCUAGG   1208 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0232J05 mRNA, complete cds	NA	coding protein	psRNATarget
BT018349.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=||*||||||||||||||| targets:554   AAGGGGAUGUUUGGUUUCUAGG   575 Target Full Sequence	2.0	Zea mays clone EL01T0403E10.c mRNA sequence	NA	coding protein	psRNATarget
BT016605.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=|||||||||||||*|||| targets:950   AAGGGGGUGUUUGGUUUGUAGG   971 Target Full Sequence	2.5	Zea mays clone Contig438 mRNA sequence	NA	coding protein	psRNATarget
XM_008654984.2	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=|||||||||||||*|||| targets:2900   AAGGGGGUGUUUGGUUUGUAGG   2921 Target Full Sequence	2.5	PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA	NA	coding protein	psRNATarget
XM_020546796.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=||*||||||||||||||| targets:3398   AAGGGGAUGUUUGGUUUCUAGG   3419 Target Full Sequence	2.0	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020546795.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=||*||||||||||||||| targets:3473   AAGGGGAUGUUUGGUUUCUAGG   3494 Target Full Sequence	2.0	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020546794.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=||*||||||||||||||| targets:3523   AAGGGGAUGUUUGGUUUCUAGG   3544 Target Full Sequence	2.0	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546793.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=||*||||||||||||||| targets:3560   AAGGGGAUGUUUGGUUUCUAGG   3581 Target Full Sequence	2.0	PREDICTED: Zea mays F-box/LRR-repeat protein 15-like (LOC103643599), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU956677.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *||=|||||||||||||||||* targets:2006   UAGGGGGUGUUUGGUUUCUAGA   2027 Target Full Sequence	2.0	Zea mays clone 1570443 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT083561.2	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *||||||||||||*|||||||| targets:171   UAGAGGGUGUUUGAUUUCUAGG   192 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0012F08 mRNA, complete cds	NA	coding protein	psRNATarget
EZ052038.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *||||||||||||*|||||||| targets:168   UAGAGGGUGUUUGAUUUCUAGG   189 Target Full Sequence	1.5	TSA: Zea mays contig53158, mRNA sequence	NA	coding protein	psRNATarget
XM_008667360.2	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *||*|||||||||||||||||| targets:1140   UAGUGGGUGUUUGGUUUCUAGG   1161 Target Full Sequence	1.0	PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA	NA	coding protein	psRNATarget
NM_001112512.2	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *||=|||*|||||||||||||| targets:1539   UAGGGGGCGUUUGGUUUCUAGG   1560 Target Full Sequence	2.0	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
EZ061563.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *||=|||||||||||||*|||| targets:314   UAGGGGGUGUUUGGUUUAUAGG   335 Target Full Sequence	2.5	TSA: Zea mays contig62685, mRNA sequence	NA	coding protein	psRNATarget
EU943837.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *||=|||||||||||||*|||| targets:388   UAGGGGGUGUUUGGUUUAUAGG   409 Target Full Sequence	2.5	Zea mays clone 1689635 mRNA sequence	NA	coding protein	psRNATarget
XM_020547858.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *=|*|||||||||||||||||| targets:1535   UGGUGGGUGUUUGGUUUCUAGG   1556 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU957613.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |=|||||||||||||||*|||* targets:622   AGGAGGGUGUUUGGUUUGUAGA   643 Target Full Sequence	2.5	Zea mays clone 1599137 mRNA sequence	NA	coding protein	psRNATarget
LQ238867.1	ncRNA:19   UCCCACAAACCAAAGAUCC   1   =|||||||||||||||||| targets:1   GGGGUGUUUGGUUUCUAGG   19 Target Full Sequence	1.0	Sequence 4862 from Patent EP2985353	NA	coding protein	psRNATarget
JB167201.1	ncRNA:19   UCCCACAAACCAAAGAUCC   1   =|||||||||||||||||| targets:1   GGGGUGUUUGGUUUCUAGG   19 Target Full Sequence	1.0	Sequence 4865 from Patent EP2559767	NA	coding protein	psRNATarget
JB167198.1	ncRNA:19   UCCCACAAACCAAAGAUCC   1   =|||||||||||||||||| targets:1   GGGGUGUUUGGUUUCUAGG   19 Target Full Sequence	1.0	Sequence 4862 from Patent EP2559767	NA	coding protein	psRNATarget
HI406737.1	ncRNA:19   UCCCACAAACCAAAGAUCC   1   =|||||||||||||||||| targets:1   GGGGUGUUUGGUUUCUAGG   19 Target Full Sequence	1.0	Sequence 4862 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238870.1	ncRNA:19   UCCCACAAACCAAAGAUCC   1   =|||||||||||||||||| targets:1   GGGGUGUUUGGUUUCUAGG   19 Target Full Sequence	1.0	Sequence 4865 from Patent EP2985353	NA	coding protein	psRNATarget
HI406740.1	ncRNA:19   UCCCACAAACCAAAGAUCC   1   =|||||||||||||||||| targets:1   GGGGUGUUUGGUUUCUAGG   19 Target Full Sequence	1.0	Sequence 4865 from Patent EP2074227	NA	coding protein	psRNATarget
BT088053.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *=*=|||||||||||||||||| targets:799   UGCGGGGUGUUUGGUUUCUAGG   820 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0380J10 mRNA, complete cds	NA	coding protein	psRNATarget
BT039671.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *=*=|||||||||||||||||| targets:1057   UGCGGGGUGUUUGGUUUCUAGG   1078 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0037P09 mRNA, complete cds	NA	coding protein	psRNATarget
EU962491.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *=*=|||||||||||||||||| targets:1117   UGCGGGGUGUUUGGUUUCUAGG   1138 Target Full Sequence	1.0	Zea mays clone 243115 mRNA sequence	NA	coding protein	psRNATarget
BT087555.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *=*=|||||||||||||||||| targets:1171   UGCGGGGUGUUUGGUUUCUAGG   1192 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0108F07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001136807.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *=*=|||||||||||||||||| targets:1217   UGCGGGGUGUUUGGUUUCUAGG   1238 Target Full Sequence	1.0	Zea mays Protein LIKE COV 2 (LOC100191373), mRNA	NA	coding protein	psRNATarget
BT033446.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *=*=|||||||||||||||||| targets:1217   UGCGGGGUGUUUGGUUUCUAGG   1238 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0157F18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008655999.2	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *=*=|||||||||||||||||| targets:1158   UGCGGGGUGUUUGGUUUCUAGG   1179 Target Full Sequence	1.0	PREDICTED: Zea mays Protein LIKE COV 2 (LOC100191373), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235170.1	ncRNA:19   UCCCACAAACCAAAGAUCC   1   *|||||||||||||||||| targets:1   UGGGUGUUUGGUUUCUAGG   19 Target Full Sequence	1.0	Sequence 1165 from Patent EP2985353	NA	coding protein	psRNATarget
JB163501.1	ncRNA:19   UCCCACAAACCAAAGAUCC   1   *|||||||||||||||||| targets:1   UGGGUGUUUGGUUUCUAGG   19 Target Full Sequence	1.0	Sequence 1165 from Patent EP2559767	NA	coding protein	psRNATarget
HI403040.1	ncRNA:19   UCCCACAAACCAAAGAUCC   1   *|||||||||||||||||| targets:1   UGGGUGUUUGGUUUCUAGG   19 Target Full Sequence	1.0	Sequence 1165 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020549827.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *|*=|||||||||||||=|||| targets:1841   UAUGGGGUGUUUGGUUUUUAGG   1862 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100381696), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674864.2	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *|*=|||||||||||||=|||| targets:2216   UAUGGGGUGUUUGGUUUUUAGG   2237 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100381696), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001174508.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *|*=|||||||||||||=|||| targets:2275   UAUGGGGUGUUUGGUUUUUAGG   2296 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100381696), mRNA	NA	coding protein	psRNATarget
BT062019.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   *|*=|||||||||||||=|||| targets:2275   UAUGGGGUGUUUGGUUUUUAGG   2296 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206L01 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154575.2	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=*|*||||||||||||||| targets:1855   AAGGAGAUGUUUGGUUUCUAGG   1876 Target Full Sequence	3.0	Zea mays uncharacterized LOC100281656 (si605087c09), mRNA	NA	coding protein	psRNATarget
EU957463.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||=*|*||||||||||||||| targets:1856   AAGGAGAUGUUUGGUUUCUAGG   1877 Target Full Sequence	3.0	Zea mays clone 1593330 selenium-binding protein-like mRNA, complete cds	NA	coding protein	psRNATarget
EU941753.1	ncRNA:20   CUCCCACAAACCAAAGAUCC   1   |=||*||||||||||||||| targets:1   GGGGAUGUUUGGUUUCUAGG   20 Target Full Sequence	2.0	Zea mays clone 1469712 mRNA sequence	NA	coding protein	psRNATarget
BT064233.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   ||-|*||||||||||||=|||| targets:2073   AA-AUGGUGUUUGGUUUUUAGG   2093 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0150L11 mRNA, complete cds	NA	coding protein	psRNATarget
BT063047.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   ||-|*||||||||||||=|||| targets:2067   AA-AUGGUGUUUGGUUUUUAGG   2087 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174830.1	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   ||-|*||||||||||||=|||| targets:2067   AA-AUGGUGUUUGGUUUUUAGG   2087 Target Full Sequence	2.5	Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA	NA	coding protein	psRNATarget
XM_008676866.2	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||**|*||||||||||||||| targets:46   AAGCUGCUGUUUGGUUUCUAGG   67 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103651247 (LOC103651247), mRNA	NA	coding protein	psRNATarget
XM_008670089.2	ncRNA:22   UUCUCCCACAAACCAAAGAUCC   1   |||**|*||||||||||||||| targets:2310   AAGCUGCUGUUUGGUUUCUAGG   2331 Target Full Sequence	3.0	PREDICTED: Zea mays SH3 domain-containing protein (LOC100274171), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235125.1	ncRNA:19   UCCCACAAACCAAAGAUCC   1   |||*||||||||||||||* targets:1   AGGAUGUUUGGUUUCUAGU   19 Target Full Sequence	2.0	Sequence 1120 from Patent EP2985353	NA	coding protein	psRNATarget
HI402995.1	ncRNA:19   UCCCACAAACCAAAGAUCC   1   |||*||||||||||||||* targets:1   AGGAUGUUUGGUUUCUAGU   19 Target Full Sequence	2.0	Sequence 1120 from Patent EP2074227	NA	coding protein	psRNATarget
JB163456.1	ncRNA:19   UCCCACAAACCAAAGAUCC   1   |||*||||||||||||||* targets:1   AGGAUGUUUGGUUUCUAGU   19 Target Full Sequence	2.0	Sequence 1120 from Patent EP2559767	NA	coding protein	psRNATarget