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BaseInfo

ncRNA ID novel_zma_miR5170
Species Zea mays
Class miRNA
Genome position Chr3:145076590-145076673 [-]
Reference genome RefGen_v4
Source SRR2287164
Length 22
Mature sequence(if miRNA) 63 - ACACAAAGGACAAGAUGAAGGA - 84
Stem-loop(if miRNA) --A        AC    -   AG    U     CCACAAAUGG
   CACAAAGG  AAGA UGA  GAUG GGUCU          A
   ||||||||  |||| |||  |||| |||||          G
   GUGUUUCU  UUCU ACU  UUAC CCUCG          A
UUA        -A    U   CU    -     AGAUUUGAAA
Stem-loop sequence ACACAAAGGACAAGAUGAAGGAUGUGGUCUCCACAAAUGGAGAAAAGUUUAGAGCUCCCAUUUCUCAUUCUUAUCUUUGUGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008679900.2
ncRNA:22   AGGAAGUAGAACAGGAAACACA   1
  ||*|||*|||||||*|||||||
targets:1698   UCAUUCUUCUUGUCAUUUGUGU   1719

2.5 PREDICTED: Zea mays receptor protein kinase TMK1 (LOC103652907), mRNA NA coding protein psRNATarget