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BaseInfo

ncRNA ID	novel_zma_miR5168
Species	Zea mays
Class	miRNA
Genome position	Chr3:178120731-178120898 [-]
Reference genome	RefGen_v4
Source	SRR2287164
Length	24
Mature sequence(if miRNA)	1 - UGGAUCAGAUGGUUUACUUGCACG - 24
Stem-loop(if miRNA)	--      C   A                 CG     C  C       C  AUUUAACACUUAAACCCUUCCACCACCA  UCAAUAAUCUUUAUAAA   UGCAAG AAA CAUCUGAUCCAUUAGAU  UGGUC AA CGUAGGU AC                            GC                 A   |||||| ||| |||||||||||||||||  ||||| || ||||||| ||                            ||   ACGUUC UUU GUAGACUAGGUAAUCUA  GCUAG UU GUAUCUA UG                            UG                 A GC      A   G                 AU     A  A       -  ---------------------------C  GUACCAAACGAUCCCAA
Stem-loop sequence	UGCAAGCAAAACAUCUGAUCCAUUAGAUCGUGGUCCAACCGUAGGUCACAUUUAACACUUAAACCCUUCCACCACCAGCUCAAUAAUCUUUAUAAAAAAACCCUAGCAAACCAUGGUCGUAUCUAUGAUUAGAUCGUAAUCUAAUGGAUCAGAUGGUUUACUUGCACG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163476.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   =||||||||||||||||||=|||| targets:3   UGUGCAAGUAAACCAUCUGGUCCA   26 Target Full Sequence	1.5	Sequence 1140 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235145.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   =||||||||||||||||||=|||| targets:3   UGUGCAAGUAAACCAUCUGGUCCA   26 Target Full Sequence	1.5	Sequence 1140 from Patent EP2985353	NA	coding protein	psRNATarget
HI403015.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   =||||||||||||||||||=|||| targets:3   UGUGCAAGUAAACCAUCUGGUCCA   26 Target Full Sequence	1.5	Sequence 1140 from Patent EP2074227	NA	coding protein	psRNATarget
HI403426.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   ||||||||*||||||||||||||| targets:25   CGUGCAAGCAAACCAUCUGAUCCA   48 Target Full Sequence	1.0	Sequence 1551 from Patent EP2074227	NA	coding protein	psRNATarget
JB163887.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   ||||||||*||||||||||||||| targets:25   CGUGCAAGCAAACCAUCUGAUCCA   48 Target Full Sequence	1.0	Sequence 1551 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235556.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   ||||||||*||||||||||||||| targets:25   CGUGCAAGCAAACCAUCUGAUCCA   48 Target Full Sequence	1.0	Sequence 1551 from Patent EP2985353	NA	coding protein	psRNATarget
JB163917.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   ||||||||*||||||||||||||| targets:27   CGUGCAAGCAAACCAUCUGAUCCA   50 Target Full Sequence	1.0	Sequence 1581 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235586.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   ||||||||*||||||||||||||| targets:27   CGUGCAAGCAAACCAUCUGAUCCA   50 Target Full Sequence	1.0	Sequence 1581 from Patent EP2985353	NA	coding protein	psRNATarget
HI403456.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   ||||||||*||||||||||||||| targets:27   CGUGCAAGCAAACCAUCUGAUCCA   50 Target Full Sequence	1.0	Sequence 1581 from Patent EP2074227	NA	coding protein	psRNATarget
HI402933.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   |||*|||||||||||||||||||| targets:34   CGUACAAGUAAACCAUCUGAUCCA   57 Target Full Sequence	0.0	Sequence 1058 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235063.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   |||*|||||||||||||||||||| targets:34   CGUACAAGUAAACCAUCUGAUCCA   57 Target Full Sequence	0.0	Sequence 1058 from Patent EP2985353	NA	coding protein	psRNATarget
JB163394.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   |||*|||||||||||||||||||| targets:34   CGUACAAGUAAACCAUCUGAUCCA   57 Target Full Sequence	0.0	Sequence 1058 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020538741.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   ||||||||*||||||||||||||| targets:827   CGUGCAAGCAAACCAUCUGAUCCA   850 Target Full Sequence	1.0	PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008648194.2	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   ||||||||*||||||||||||||| targets:827   CGUGCAAGCAAACCAUCUGAUCCA   850 Target Full Sequence	1.0	PREDICTED: Zea mays protein PHOSPHATE STARVATION RESPONSE 1 (LOC103627889), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT066599.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   ||||||||*||||=|||||||||| targets:668   CGUGCAAGCAAACUAUCUGAUCCA   691 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0034B07 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008664646.2	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   ||||||||*|||||||=||||||| targets:229   CGUGCAAGCAAACCAUUUGAUCCA   252 Target Full Sequence	2.5	PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008664645.2	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   ||||||||*|||||||=||||||| targets:229   CGUGCAAGCAAACCAUUUGAUCCA   252 Target Full Sequence	2.5	PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008664644.2	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   ||||||||*|||||||=||||||| targets:229   CGUGCAAGCAAACCAUUUGAUCCA   252 Target Full Sequence	2.5	PREDICTED: Zea mays O-methyltransferase MdmC (LOC103641291), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008646929.2	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   ||||||||*||||=|||||||||| targets:2288   CGUGCAAGCAAACUAUCUGAUCCA   2311 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103626515), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008646930.2	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   ||||||||*||||=|||||||||| targets:2297   CGUGCAAGCAAACUAUCUGAUCCA   2320 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103626515), transcript variant X4, mRNA	NA	coding protein	psRNATarget
LQ235069.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   =|||=|||*||||||||||||||| targets:26   UGUGUAAGCAAACCAUCUGAUCCA   49 Target Full Sequence	1.0	Sequence 1064 from Patent EP2985353	NA	coding protein	psRNATarget
JB163648.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   =|||||||*||||||||||||=|| targets:26   UGUGCAAGCAAACCAUCUGAUUCA   49 Target Full Sequence	2.5	Sequence 1312 from Patent EP2559767	NA	coding protein	psRNATarget
HI402939.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   =|||=|||*||||||||||||||| targets:26   UGUGUAAGCAAACCAUCUGAUCCA   49 Target Full Sequence	1.0	Sequence 1064 from Patent EP2074227	NA	coding protein	psRNATarget
HI403187.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   =|||||||*||||||||||||=|| targets:26   UGUGCAAGCAAACCAUCUGAUUCA   49 Target Full Sequence	2.5	Sequence 1312 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235317.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   =|||||||*||||||||||||=|| targets:26   UGUGCAAGCAAACCAUCUGAUUCA   49 Target Full Sequence	2.5	Sequence 1312 from Patent EP2985353	NA	coding protein	psRNATarget
JB163400.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   =|||=|||*||||||||||||||| targets:26   UGUGUAAGCAAACCAUCUGAUCCA   49 Target Full Sequence	1.0	Sequence 1064 from Patent EP2559767	NA	coding protein	psRNATarget
JB163578.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   =|||=|||*||||||||||||||| targets:26   UGUGUAAGCAAACCAUCUGAUCCA   49 Target Full Sequence	1.0	Sequence 1242 from Patent EP2559767	NA	coding protein	psRNATarget
HI403117.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   =|||=|||*||||||||||||||| targets:26   UGUGUAAGCAAACCAUCUGAUCCA   49 Target Full Sequence	1.0	Sequence 1242 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235247.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   =|||=|||*||||||||||||||| targets:26   UGUGUAAGCAAACCAUCUGAUCCA   49 Target Full Sequence	1.0	Sequence 1242 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020548736.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   |||||||*||||||||||*||||| targets:1679   CGUGCAAAUAAACCAUCUAAUCCA   1702 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103648255 (LOC103648255), mRNA	NA	coding protein	psRNATarget
JB163608.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   =|||||||*||*|||||||||||| targets:26   UGUGCAAGCAAUCCAUCUGAUCCA   49 Target Full Sequence	2.5	Sequence 1272 from Patent EP2559767	NA	coding protein	psRNATarget
HI403147.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   =|||||||*||*|||||||||||| targets:26   UGUGCAAGCAAUCCAUCUGAUCCA   49 Target Full Sequence	2.5	Sequence 1272 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235277.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   =|||||||*||*|||||||||||| targets:26   UGUGCAAGCAAUCCAUCUGAUCCA   49 Target Full Sequence	2.5	Sequence 1272 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235525.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   |||*||||*|||||||||*||||| targets:26   CGUACAAGCAAACCAUCUAAUCCA   49 Target Full Sequence	2.5	Sequence 1520 from Patent EP2985353	NA	coding protein	psRNATarget
HI403395.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   |||*||||*|||||||||*||||| targets:26   CGUACAAGCAAACCAUCUAAUCCA   49 Target Full Sequence	2.5	Sequence 1520 from Patent EP2074227	NA	coding protein	psRNATarget
JB163856.1	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   |||*||||*|||||||||*||||| targets:26   CGUACAAGCAAACCAUCUAAUCCA   49 Target Full Sequence	2.5	Sequence 1520 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008679933.2	ncRNA:24   GCACGUUCAUUUGGUAGACUAGGU   1   ||||*|||*|||||||||*||||| targets:1653   CGUGAAAGCAAACCAUCUUAUCCA   1676 Target Full Sequence	2.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA	NA	coding protein	psRNATarget