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BaseInfo

ncRNA ID	novel_zma_miR5159
Species	Zea mays
Class	miRNA
Genome position	Chr2:156666092-156666173 [+]
Reference genome	RefGen_v4
Source	SRR2287164
Length	24
Mature sequence(if miRNA)	59 - AAAAGUACUCGGUAAAGAAGGCUU - 82
Stem-loop(if miRNA)	--     U               ----CCUA           A   GCUUU CUUUGCCGAGUACUU        GCACUCGGCAA G   ||||| |||||||||||||||        ||||||||||| U   CGGAA GAAAUGGCUCAUGAA        CGUGAGCCGUU C UU     -               AAAAAGCC           U
Stem-loop sequence	GCUUUUCUUUGCCGAGUACUUCCUAGCACUCGGCAAAGUCUUUGCCGAGUGCCCGAAAAAAAGUACUCGGUAAAGAAGGCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI407253.1	ncRNA:24   UUCGGAAGAAAUGGCUCAUGAAAA   1   |||||||||||=|||||||||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	1.5	Sequence 5378 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239383.1	ncRNA:24   UUCGGAAGAAAUGGCUCAUGAAAA   1   |||||||||||=|||||||||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	1.5	Sequence 5378 from Patent EP2985353	NA	coding protein	psRNATarget
JB167714.1	ncRNA:24   UUCGGAAGAAAUGGCUCAUGAAAA   1   |||||||||||=|||||||||||| targets:29   AAGCCUUCUUUGCCGAGUACUUUU   52 Target Full Sequence	1.5	Sequence 5378 from Patent EP2559767	NA	coding protein	psRNATarget
EU974507.1	ncRNA:24   UUCGGAAGAAAUGGCUCAUGAAAA   1   *|||-||||||=|||||||||||| targets:443   CAGC-UUCUUUGCCGAGUACUUUU   465 Target Full Sequence	1.5	Zea mays clone 451014 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU957858.1	ncRNA:24   UU-CGGAAGAAAUGGCUCAUGAAAA   1   ||-|*|||*|||||||||||||||| targets:1235   AACGGCUUAUUUACCGAGUACUUUU   1259 Target Full Sequence	1.0	Zea mays clone 1627310 mRNA sequence	NA	coding protein	psRNATarget