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BaseInfo

ncRNA ID	novel_zma_miR5158
Species	Zea mays
Class	miRNA
Genome position	Chr6:157421501-157421623 [-]
Reference genome	RefGen_v4
Source	SRR1618882
Length	24
Mature sequence(if miRNA)	100 - UUUUAGUCUCUCAAUUUUAUUCUA - 123
Stem-loop(if miRNA)	--           CA                 -A   UAAAU            A    A   C   UUUUAGUCUCU  AUUUUAUUCUAUUUUAG  CCU     UGCUAAAUACGG AACU AAA U   |||||||||||  |||||||||||||||||  |||     |||||||||||| |||| ||| A   AAAAUCAGAGA  UAAAAUAAGAUAAAAUU  GGA     AUGAUUUAUGUC UUGA UUU U UA           UA                 AA   -----            C    C   A
Stem-loop sequence	UUUUAGUCUCUCAAUUUUAUUCUAUUUUAGACCUUAAAUUGCUAAAUACGGAAACUAAAACUAUAUUUCAGUUCCUGUAUUUAGUAAGGAAUUAAAAUAGAAUAAAAUAUAGAGACUAAAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008647122.2	ncRNA:24   AUCUUAUUUUAACUCUCUGAUUUU   1   |=|||||||*|*|||||||||||| targets:3086   UGGAAUAAAUUGGAGAGACUAAAA   3109 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:24   AUCUUAUUUUAACUCUCUGAUUUU   1   |=|||||||*|*|||||||||||| targets:2697   UGGAAUAAAUUGGAGAGACUAAAA   2720 Target Full Sequence	2.5	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670810.2	ncRNA:24   AUCU---UAUUUUAACUCUCUGAUUUU   1   *|||---|||*|||||||||||||||* targets:2552   AAGAUGUAUAUAAUUGAGAGACUAAAU   2578 Target Full Sequence	2.0	PREDICTED: Zea mays Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (LOC103646084), mRNA	NA	coding protein	psRNATarget
XM_020542366.1	ncRNA:24   AUCUUAUUUUAACUCUCUGAUUUU   1   *=||*||||||*|||||||||||= targets:4394   GGGACUAAAAUAGAGAGACUAAAG   4417 Target Full Sequence	2.5	PREDICTED: Zea mays helicase-like transcription factor CHR28 (LOC103636595), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658953.2	ncRNA:24   AUCUUAUUUUAACUCUCUGAUUUU   1   *=||*||||||*|||||||||||= targets:4261   GGGACUAAAAUAGAGAGACUAAAG   4284 Target Full Sequence	2.5	PREDICTED: Zea mays helicase-like transcription factor CHR28 (LOC103636595), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542368.1	ncRNA:24   AUCUUAUUUUAACUCUCUGAUUUU   1   *=||*||||||*|||||||||||= targets:4005   GGGACUAAAAUAGAGAGACUAAAG   4028 Target Full Sequence	2.5	PREDICTED: Zea mays helicase-like transcription factor CHR28 (LOC103636595), transcript variant X3, mRNA	NA	coding protein	psRNATarget