Search result

BaseInfo

ncRNA ID	novel_zma_miR5157
Species	Zea mays
Class	miRNA
Genome position	Chr8:177458407-177458577 [-]
Reference genome	RefGen_v4
Source	SRR1583941;SRR2638137;SRR2647221;SRR2647343;SRR2647385;SRR2647386;SRR2647387;SRR2647388;SRR2647389;SRR2647390
Length	24
Mature sequence(if miRNA)	148 - ACGAACUUUGAAAAUGCAUUUAUA - 171
Stem-loop(if miRNA)	--                     A  UA                      UG     CAUCCCUAA  U ----  AAAAAUGGUGCAUC   ACGAACUUUGAAAAUGCAUUU UA  UUCUUGAACUUGUUAAGUGAUG  CCACA         AC C    GU              G   ||||||||||||||||||||| ||  ||||||||||||||||||||||  |||||         || |    ||              C   UGCUUGAAAUUUUUAUGUAAA AU  AGGAACUUGAACAAUUCACUGU  GGUGU         AG C    CC              A GG                     A  CC                      GU     -----UAUC  - UAUA  AGGUUUUUACCUGG
Stem-loop sequence	ACGAACUUUGAAAAUGCAUUUAUAUAUUCUUGAACUUGUUAAGUGAUGUGCCACACAUCCCUAAACUCGUAAAAAUGGUGCAUCGCAGGUCCAUUUUUGGACCAUAUCGACUAUUGUGGUGUGUCACUUAACAAGUUCAAGGACCUAAAAAUGUAUUUUUAAAGUUCGUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008667413.1	ncRNA:24   AUAUUUACGUAAAAGUUUCAAGCA   1   *|*||||||||||||||||||=|| targets:1084   CAGAAAUGCAUUUUCAAAGUUUGU   1107 Target Full Sequence	1.5	PREDICTED: Zea mays polygalacturonase (LOC103644217), mRNA	NA	coding protein	psRNATarget
EU962359.1	ncRNA:24   AUAUUUACGUAAAAGUUUCAAGCA   1   ||*|||||=|||||||||||*||| targets:247   UAAAAAUGUAUUUUCAAAGUCCGU   270 Target Full Sequence	2.5	Zea mays clone 242021 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150240.1	ncRNA:24   AUAUUUACGUAAAAGUUUCAAGCA   1   ||*|||||=|||||||||||*||| targets:247   UAAAAAUGUAUUUUCAAAGUCCGU   270 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100276452), mRNA	NA	coding protein	psRNATarget