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BaseInfo

ncRNA ID	novel_zma_miR5156
Species	Zea mays
Class	miRNA
Genome position	Chr2:5501611-5501658 [+]
Reference genome	RefGen_v4
Source	SRR2287164
Length	23
Mature sequence(if miRNA)	26 - UGGUUUGUGGAAUGGGAUGGGUU - 48
Stem-loop(if miRNA)	---  U         U  CU   U    UC UCUCAUUUC CA  UUA U    || ||||||||| ||  ||| G    GG AGGGUAAGG GU  GGU U UUG  U         U  UU   U
Stem-loop sequence	UCUUCUCAUUUCUCACUUUAUUGUUUGGUUUGUGGAAUGGGAUGGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ107666.1	ncRNA:23   UUGGGUAGGGUAAGGUGUUUGGU   1   |||=|||=||||||||||||||| targets:145   AACUCAUUCCAUUCCACAAACCA   167 Target Full Sequence	1.0	TSA: Zea mays contig43324, mRNA sequence	NA	coding protein	psRNATarget
EZ516623.1	ncRNA:23   UUGGGUAGGGUAAGGUGUUUGGU   1   |||=|||=||||||||||||||| targets:70   AACUCAUUCCAUUCCACAAACCA   92 Target Full Sequence	1.0	TSA: Zea mays cultivar W22 CL30Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
BT018328.1	ncRNA:23   UUGGGUAGGGUAAGGUGUUUGGU   1   |||=|||=||||||||||||||| targets:559   AACUCAUUCCAUUCCACAAACCA   581 Target Full Sequence	1.0	Zea mays clone EL01T0208F04.c mRNA sequence	NA	coding protein	psRNATarget
XM_008670083.2	ncRNA:23   UUGGGUAGGGUAAGGUGUUUGGU   1   |||||||=|=||||||||||||| targets:2841   AACCCAUUCUAUUCCACAAACCA   2863 Target Full Sequence	2.0	PREDICTED: Zea mays Putative leucine-rich repeat receptor-like serine/threonine-protein kinase (LOC100382014), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670082.2	ncRNA:23   UUGGGUAGGGUAAGGUGUUUGGU   1   |||||||=|=||||||||||||| targets:2865   AACCCAUUCUAUUCCACAAACCA   2887 Target Full Sequence	2.0	PREDICTED: Zea mays Putative leucine-rich repeat receptor-like serine/threonine-protein kinase (LOC100382014), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU946477.1	ncRNA:23   UUGGGUAGGGUAAGGUGUUUGGU   1   |||=|||=||||||||||||=|| targets:353   AACUCAUUCCAUUCCACAAAUCA   375 Target Full Sequence	2.5	Zea mays clone 313395 mRNA sequence	NA	coding protein	psRNATarget
BT085306.2	ncRNA:23   UUGGGUAGGGUAAGGUGUUUGGU   1   |||=|||=|=||||||||||||| targets:883   AACUCAUUCUAUUCCACAAACCA   905 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0370B19 mRNA, complete cds	NA	coding protein	psRNATarget
BT088243.1	ncRNA:23   UUGGGUAGGGUAAGGUGUUUGGU   1   |||=|||=|=||||||||||||| targets:728   AACUCAUUCUAUUCCACAAACCA   750 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0092D01 mRNA, complete cds	NA	coding protein	psRNATarget
BT088271.1	ncRNA:23   UUGGGUAGGGUAAGGUGUUUGGU   1   |||=|||=|=||||||||||||| targets:1267   AACUCAUUCUAUUCCACAAACCA   1289 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0109D11 mRNA, complete cds	NA	coding protein	psRNATarget
EU957763.1	ncRNA:23   UUGGGUAGGGUAAGGUGUUUGGU   1   |||=|||=|=||||||||||||| targets:1321   AACUCAUUCUAUUCCACAAACCA   1343 Target Full Sequence	2.0	Zea mays clone 1615157 mRNA sequence	NA	coding protein	psRNATarget
XM_020549526.1	ncRNA:23   UUGGGUAGGGUAAGGUGUUUGGU   1   |||=|||=||||||=|||||||| targets:2411   AACUCAUUCCAUUCUACAAACCA   2433 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100216945 (si683005a07), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020548365.1	ncRNA:23   UUGGGUAGGGUAAGGUGUUUGGU   1   ||==|||=||||||||||||||| targets:1713   AAUUCAUUCCAUUCCACAAACCA   1735 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103646691 (LOC103646691), transcript variant X17, mRNA	NA	coding protein	psRNATarget
XM_020548362.1	ncRNA:23   UUGGGUAGGGUAAGGUGUUUGGU   1   ||==|||=||||||||||||||| targets:1714   AAUUCAUUCCAUUCCACAAACCA   1736 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103646691 (LOC103646691), transcript variant X11, mRNA	NA	coding protein	psRNATarget
XM_020548364.1	ncRNA:23   UUGGGUAGGGUAAGGUGUUUGGU   1   ||==|||=||||||||||||||| targets:1714   AAUUCAUUCCAUUCCACAAACCA   1736 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103646691 (LOC103646691), transcript variant X15, mRNA	NA	coding protein	psRNATarget
EZ056855.1	ncRNA:23   UUGGGUAGGGUAAGGUGUUUGGU   1   |||=||*=||||||||||||||| targets:73   AACUCAAUCCAUUCCACAAACCA   95 Target Full Sequence	2.0	TSA: Zea mays contig57977, mRNA sequence	NA	coding protein	psRNATarget
EZ076283.1	ncRNA:23   UUGGGUAGGGUAAGGUGUUUGGU   1   |||=||*=|=||||||||||||| targets:37   AACUCAAUCUAUUCCACAAACCA   59 Target Full Sequence	3.0	TSA: Zea mays contig11920, mRNA sequence	NA	coding protein	psRNATarget
EZ078041.1	ncRNA:23   UUGGGUAGGGUAAGGUGUUUGGU   1   |=*|=||=|=||||||||||||| targets:38   AGACUAUUCUAUUCCACAAACCA   60 Target Full Sequence	3.0	TSA: Zea mays contig13680, mRNA sequence	NA	coding protein	psRNATarget
XM_020550960.1	ncRNA:23   UUG--GGUAGGGUAAGGUGUUUGGU   1   ||=--||||*|||||*||||||||| targets:484   AAUGACCAUACCAUUGCACAAACCA   508 Target Full Sequence	2.5	PREDICTED: Zea mays T-complex protein 1 subunit zeta 1-like (LOC103650914), mRNA	NA	coding protein	psRNATarget