Search result

BaseInfo

ncRNA ID	osa-miRf10112-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	25
Mature sequence(if miRNA)	NA - CCCGGUUGGUAACACCAACCGGGAA - NA
Stem-loop(if miRNA)	C           AA    AUCG UAGUCCCGGUUGGUAA ACCAACCGGGA  AAAG    C |||||||||||||||| |||||||||||  ||||    U AUCAGGGCCAACCAUU UGGUUGGCCCU  UUUC    A                 A           CA    ACAU
Stem-loop sequence	UAGUCCCGGUUGGUAACACCAACCGGGAAAAAAGAUCGCUAUACACUUUACUCCCGGUUGGUAUUACCAACCGGGACUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289098.1	ncRNA:25   AAGGGCCAACCACAAUGGUUGGCCC   1   *|||||||||||||||||||||||| targets:155   GUCCCGGUUGGUGUUACCAACCGGG   179 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:25   AAGGGCCAACCACAAUGGUUGGCCC   1   *|||||||||||*|||||||||||| targets:112   CUCCCGGUUGGUUUUACCAACCGGG   136 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:25   AAGGGCCAACCACAAUGGUUGGCCC   1   *|||||||||||||||||||||||* targets:1838   GUCCCGGUUGGUGUUACCAACCGGA   1862 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
XM_015758314.1	ncRNA:25   AAGGGCCAACCACAAUGGUUGGCCC   1   *||||||||*||||||||||||||| targets:914   GUCCCGGUUUGUGUUACCAACCGGG   938 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278346 (LOC107278346), transcript variant X1, mRNA	uncharacterized LOC107278346(LOC107278346)	coding protein	psRNATarget
AK288377.1	ncRNA:25   AAGGGCCAACCACAAUGGUUGGCCC   1   *|||||||||||||||||||||*|| targets:1384   GUCCCGGUUGGUGUUACCAACCUGG   1408 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:25   AAGGGCCAACCACAAUGGUUGGCCC   1   *||||||||*||||||||||||||| targets:2389   GUCCCGGUUAGUGUUACCAACCGGG   2413 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288405.1	ncRNA:25   AAGGGCCAACCACAAUGGUUGGCCC   1   *||||*||||||||||||||||||| targets:2396   GUCCCCGUUGGUGUUACCAACCGGG   2420 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090030E11, full insert sequence	NA	coding protein	psRNATarget
JB164979.1	ncRNA:25   AA---GGGCCAACCACAAUGGUUGGCCC   1   ||---|||||||||||*||||||||||| targets:48   UUAGCCCCGGUUGGUGCUACCAACCGGG   75 Target Full Sequence	1.5	Sequence 2643 from Patent EP2559767	NA	coding protein	psRNATarget
HI404518.1	ncRNA:25   AA---GGGCCAACCACAAUGGUUGGCCC   1   ||---|||||||||||*||||||||||| targets:48   UUAGCCCCGGUUGGUGCUACCAACCGGG   75 Target Full Sequence	1.5	Sequence 2643 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236648.1	ncRNA:25   AA---GGGCCAACCACAAUGGUUGGCCC   1   ||---|||||||||||*||||||||||| targets:48   UUAGCCCCGGUUGGUGCUACCAACCGGG   75 Target Full Sequence	1.5	Sequence 2643 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015755226.1	ncRNA:25   AAGGGCCAACCACAAUGGUUGGCCC   1   *|||||||||*|||||||||||||* targets:78   GUCCCGGUUGAUGUUACCAACCGGU   102 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278786 (LOC107278786), mRNA	uncharacterized LOC107278786(LOC107278786)	coding protein	psRNATarget
HI404286.1	ncRNA:25   AAGGGCCAACCACAAUGGUUGGCCC   1   *||=||*||||||||||||||=||| targets:2   GUCUCGAUUGGUGUUACCAACUGGG   26 Target Full Sequence	2.5	Sequence 2411 from Patent EP2074227	NA	coding protein	psRNATarget
JB164747.1	ncRNA:25   AAGGGCCAACCACAAUGGUUGGCCC   1   *||=||*||||||||||||||=||| targets:2   GUCUCGAUUGGUGUUACCAACUGGG   26 Target Full Sequence	2.5	Sequence 2411 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236416.1	ncRNA:25   AAGGGCCAACCACAAUGGUUGGCCC   1   *||=||*||||||||||||||=||| targets:2   GUCUCGAUUGGUGUUACCAACUGGG   26 Target Full Sequence	2.5	Sequence 2411 from Patent EP2985353	NA	coding protein	psRNATarget
AK288624.1	ncRNA:25   AAG----GGCCAACCACAAUGGUUGGCCC   1   ||=----||||||*||||||||||||*|| targets:4957   UUUAGUACCGGUUAGUGUUACCAACCAGG   4985 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090054H14, full insert sequence	NA	coding protein	psRNATarget