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BaseInfo

ncRNA ID novel_zma_miR5149
Species Zea mays
Class miRNA
Genome position Chr2:149834160-149834216 [-]
Reference genome RefGen_v4
Source SRR2287164;SRR2287165;SRR1997865;SRR5451003;SRR5451004;SRR5451005;SRR5451006
Length 24
Mature sequence(if miRNA) 34 - GCUCGACGAACUGUACAUCGGCAG - 57
Stem-loop(if miRNA) --          CU    A       C A
  GCUCGACGAA  GUAC UCGGCAG G U
  ||||||||||  |||| ||||||| |
  CGGGCUGUUU  CAUG AGCCGUU C C
CA          UU    -       U U
Stem-loop sequence GCUCGACGAACUGUACAUCGGCAGCGAUCUCUUUGCCGAGUACUUUUUGUCGGGCAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008677261.2
ncRNA:24   GACGGCUACAUGUCAAGCAGCUCG   1
  **|*|||||*||*|||||||||||
targets:108   GAGACGAUGCACCGUUCGUCGAGC   131

2.5 PREDICTED: Zea mays uncharacterized LOC103651598 (LOC103651598), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008677260.2
ncRNA:24   GACGGCUACAUGUCAAGCAGCUCG   1
  **|*|||||*||*|||||||||||
targets:108   GAGACGAUGCACCGUUCGUCGAGC   131

2.5 PREDICTED: Zea mays uncharacterized LOC103651598 (LOC103651598), transcript variant X1, mRNA NA coding protein psRNATarget