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BaseInfo

ncRNA ID	novel_zma_miR5147
Species	Zea mays
Class	miRNA
Genome position	Chr2:181611926-181612044 [-]
Reference genome	RefGen_v4
Source	SRR2287164
Length	24
Mature sequence(if miRNA)	1 - AAUGGUAUAAAAUGAAGGGACUAA - 24
Stem-loop(if miRNA)	--      GC        U          UU        C          U       C   AGUCCC  CAUUUUAU UCAUUUUAGU  CUAAAUUG CAAAUACGGA AUUAAAA U   ||||||  |||||||| ||||||||||  |||||||| |||||||||| ||||||| C   UCAGGG  GUAAAAUA GGUAAAAUCA  GAUUUAAC GUUUAUGCCU UGAUUUU U AA      AA        U          GG        A          U       A
Stem-loop sequence	AGUCCCGCCAUUUUAUUUCAUUUUAGUUUCUAAAUUGCCAAAUACGGAUAUUAAAACUCUAUUUUAGUUUCCGUAUUUGACAAUUUAGGGACUAAAAUGGUAUAAAAUGAAGGGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020550478.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   ||||||||||||||||||*||||| targets:2648   UUAGUCCCUUCAUUUUAUUCCAUU   2671 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA	NA	coding protein	psRNATarget
BT063047.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   ||||||||||||||||||*||||| targets:2097   UUAGUCCCUUCAUUUUAUUCCAUU   2120 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174830.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   ||||||||||||||||||*||||| targets:2097   UUAGUCCCUUCAUUUUAUUCCAUU   2120 Target Full Sequence	1.5	Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA	NA	coding protein	psRNATarget
JB163505.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   |||||||||||||||||||||*|| targets:27   UUAGUCCCUUCAUUUUAUACCUUU   50 Target Full Sequence	1.5	Sequence 1169 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235174.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   |||||||||||||||||||||*|| targets:27   UUAGUCCCUUCAUUUUAUACCUUU   50 Target Full Sequence	1.5	Sequence 1169 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   ||||||||||||||||||*||||| targets:27   UUAGUCCCUUCAUUUUAUUCCAUU   50 Target Full Sequence	1.5	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
JB163513.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   ||||||||||||||||||*||||| targets:27   UUAGUCCCUUCAUUUUAUUCCAUU   50 Target Full Sequence	1.5	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
HI403044.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   |||||||||||||||||||||*|| targets:27   UUAGUCCCUUCAUUUUAUACCUUU   50 Target Full Sequence	1.5	Sequence 1169 from Patent EP2074227	NA	coding protein	psRNATarget
HI403052.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   ||||||||||||||||||*||||| targets:27   UUAGUCCCUUCAUUUUAUUCCAUU   50 Target Full Sequence	1.5	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008654984.2	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   ||||||||*|||||||||*||||| targets:2931   UUAGUCCCAUCAUUUUAUUCCAUU   2954 Target Full Sequence	2.5	PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   ||||||||*|||||||||*||||| targets:168   UUAGUCCCAUCAUUUUAUUCCAUU   191 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   |||||||||*||||||||*||||| targets:292   UUAGUCCCUCCAUUUUAUUCCAUU   315 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   |||||||||*||||||||*||||| targets:997   UUAGUCCCUACAUUUUAUUCCAUU   1020 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   ||||||||*|||||||||*||||| targets:43   UUAGUCCCAUCAUUUUAUUCCAUU   66 Target Full Sequence	2.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   |||||||||*||||||||*||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   ||||||||*|||||||||*||||| targets:43   UUAGUCCCAUCAUUUUAUUCCAUU   66 Target Full Sequence	2.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   |||||||||*||||||||*||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   ||||||||*|||||||||*||||| targets:43   UUAGUCCCAUCAUUUUAUUCCAUU   66 Target Full Sequence	2.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   |||||||||*||||||||*||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   |||||||||*||||||||*||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
JB166880.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   |||||||||*||||||||*||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
HI406419.1	ncRNA:24   AAUCAGGGAAGUAAAAUAUGGUAA   1   |||||||||*||||||||*||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget