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BaseInfo

ncRNA ID novel_zma_miR5146
Species Zea mays
Class miRNA
Genome position Chr2:188919478-188919643 [-]
Reference genome RefGen_v4
Source SRR2287164
Length 24
Mature sequence(if miRNA) 1 - UCUGGAUAGUUUGAUUGCACGUUU - 24
Stem-loop(if miRNA) --  A           G   UG U          U          AUG   AUUAUUUUAUAUUUAACCCCUUCCACCUAAAA
  GC UGCAAUCAAGC AUC  G GCAUCCGAUC AGAUCUAAUG   ACU                                C
  || ||||||||||| |||  | |||||||||| ||||||||||   |||                                A
  UG ACGUUAGUUUG UAG  C CGUAGGUUAG UCUAGGUUGC   AAG                                U
UU  C           A   GU U          U          -CA   UAUACCUUCCCCAAUUUUCAUUUUAUCCAUGA
Stem-loop sequence GCAUGCAAUCAAGCGAUCUGGUGCAUCCGAUCUAGAUCUAAUGAUGACUAUUAUUUUAUAUUUAACCCCUUCCACCUAAAACAUAGUACCUAUUUUACUUUUAACCCCUUCCAUAUGAAACCGUUGGAUCUUGAUUGGAUGCUCUGGAUAGUUUGAUUGCACGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU971778.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||||||||||||||||
targets:623   AAGCGUGCAAUCAAACUAUCCAGA   646

0.0 Zea mays clone 370490 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU954880.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||||||||||||||||
targets:637   AAGCGUGCAAUCAAACUAUCCAGA   660

0.0 Zea mays clone 1489976 ubiquitin-fusion protein mRNA, complete cds NA coding protein psRNATarget
XM_008661850.2
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||||||||||||||||
targets:638   AAGCGUGCAAUCAAACUAUCCAGA   661

0.0 PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X3, mRNA NA coding protein psRNATarget
XM_008661851.2
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||||||||||||||||
targets:651   AAGCGUGCAAUCAAACUAUCCAGA   674

0.0 PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020551352.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||||||||||||||||
targets:40   AAGCGUGCAAUCAAACUAUCCAGA   63

0.0 PREDICTED: Zea mays putative glutathione S-transferase family protein (LOC100272773), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676293.2
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||||||||||||||||
targets:1529   AAGCGUGCAAUCAAACUAUCCAGA   1552

0.0 PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X7, mRNA NA coding protein psRNATarget
XM_008676292.2
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||||||||||||||||
targets:1701   AAGCGUGCAAUCAAACUAUCCAGA   1724

0.0 PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008676294.2
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||||||||||||||||
targets:1874   AAGCGUGCAAUCAAACUAUCCAGA   1897

0.0 PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X8, mRNA NA coding protein psRNATarget
JB163561.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||==||||||||||||||||||||
targets:17   AAGUGUGCAAUCAAACUAUCCAGA   40

0.0 Sequence 1225 from Patent EP2559767 NA coding protein psRNATarget
LQ235230.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||==||||||||||||||||||||
targets:17   AAGUGUGCAAUCAAACUAUCCAGA   40

0.0 Sequence 1225 from Patent EP2985353 NA coding protein psRNATarget
HI402977.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||==||||||||||||||||||||
targets:17   AAGUGUGCAAUCAAACUAUCCAGA   40

0.0 Sequence 1102 from Patent EP2074227 NA coding protein psRNATarget
LQ235107.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||==||||||||||||||||||||
targets:17   AAGUGUGCAAUCAAACUAUCCAGA   40

0.0 Sequence 1102 from Patent EP2985353 NA coding protein psRNATarget
HI403100.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||==||||||||||||||||||||
targets:17   AAGUGUGCAAUCAAACUAUCCAGA   40

0.0 Sequence 1225 from Patent EP2074227 NA coding protein psRNATarget
JB163438.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||==||||||||||||||||||||
targets:17   AAGUGUGCAAUCAAACUAUCCAGA   40

0.0 Sequence 1102 from Patent EP2559767 NA coding protein psRNATarget
XM_008653636.2
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||||||||||||=|||
targets:2936   AAGCGUGCAAUCAAACUAUCUAGA   2959

1.5 PREDICTED: Zea mays leucine-rich repeat extensin-like protein 3 (LOC103631839), mRNA NA coding protein psRNATarget
LQ235421.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||||||||*|||||||
targets:31   AAGCGUGCAAUCAAACCAUCCAGA   54

1.5 Sequence 1416 from Patent EP2985353 NA coding protein psRNATarget
JB163752.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||||||||*|||||||
targets:31   AAGCGUGCAAUCAAACCAUCCAGA   54

1.5 Sequence 1416 from Patent EP2559767 NA coding protein psRNATarget
HI403291.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||||||||*|||||||
targets:31   AAGCGUGCAAUCAAACCAUCCAGA   54

1.5 Sequence 1416 from Patent EP2074227 NA coding protein psRNATarget
XM_008676189.2
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||*|||||||||||||||||
targets:844   AAGCGUACAAUCAAACUAUCCAGA   867

1.0 PREDICTED: Zea mays uncharacterized LOC103650617 (LOC103650617), mRNA NA coding protein psRNATarget
XM_020538318.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||*|||||||||||||||||
targets:31   AAGCGUACAAUCAAACUAUCCAGA   54

1.0 PREDICTED: Zea mays zinc finger CCCH domain-containing protein 45 (LOC103626282), mRNA NA coding protein psRNATarget
LQ235426.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||*|||||*|||||||
targets:30   AAGCGUGCAACCAAACCAUCCAGA   53

2.5 Sequence 1421 from Patent EP2985353 NA coding protein psRNATarget
HI403296.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||*|||||*|||||||
targets:30   AAGCGUGCAACCAAACCAUCCAGA   53

2.5 Sequence 1421 from Patent EP2074227 NA coding protein psRNATarget
JB163757.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||*|||||*|||||||
targets:30   AAGCGUGCAACCAAACCAUCCAGA   53

2.5 Sequence 1421 from Patent EP2559767 NA coding protein psRNATarget
JB163950.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||*|||||*|||||||
targets:31   AAGCGUGCAACCAAACCAUCCAGA   54

2.5 Sequence 1614 from Patent EP2559767 NA coding protein psRNATarget
LQ235619.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||*|||||*|||||||
targets:31   AAGCGUGCAACCAAACCAUCCAGA   54

2.5 Sequence 1614 from Patent EP2985353 NA coding protein psRNATarget
HI403489.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|||||||*|||||*|||||||
targets:31   AAGCGUGCAACCAAACCAUCCAGA   54

2.5 Sequence 1614 from Patent EP2074227 NA coding protein psRNATarget
EU946038.1
ncRNA:24   UUUGCACGUUAGUUUGAUAGGUCU   1
  ||=|*|||=|||||||*|||||||
targets:1144   AAGCCUGCGAUCAAACGAUCCAGA   1167

2.5 Zea mays clone 294377 mRNA sequence NA coding protein psRNATarget
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