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BaseInfo

ncRNA ID	novel_zma_miR5145
Species	Zea mays
Class	miRNA
Genome position	Chr2:24157349-24157460 [+]
Reference genome	RefGen_v4
Source	SRR2287164;SRR2089700;SRR2089703
Length	22
Mature sequence(if miRNA)	91 - AAAUGGAAUAAAAUGGUGGGAC - 112
Stem-loop(if miRNA)	--   UA                  -UUCA      C     A         AAAC   CCC  CAUUUUAUUCCAUUUUAG     AAAUUG UAAAU UAGAAACUA    U   |||  ||||||||||||||||||     |||||| ||||| |||||||||    C   GGG  GUAAAAUAAGGUAAAAUC     UUUAAC GUUUA AUCUUUGAU    U CA   UG                  UGAUA      A     A         CUUA
Stem-loop sequence	CCCUACAUUUUAUUCCAUUUUAGUUCAAAAUUGCUAAAUAUAGAAACUAAAACUCUAUUCUAGUUUCUAAAUUUGACAAUUUAUAGUCUAAAAUGGAAUAAAAUGGUGGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654984.2	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   ||||||=||||||||||||||| targets:2934   GUCCCAUCAUUUUAUUCCAUUU   2955 Target Full Sequence	1.0	PREDICTED: Zea mays putative mixed-linked glucan synthase 1 (LOC103633281), mRNA	NA	coding protein	psRNATarget
BT019141.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   ||||||=||||||||||||||| targets:171   GUCCCAUCAUUUUAUUCCAUUU   192 Target Full Sequence	1.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
BT019141.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||||*|||||||||||||||| targets:295   GUCCCUCCAUUUUAUUCCAUUU   316 Target Full Sequence	1.0	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
HI406713.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   ||||||=||||||||||||||| targets:46   GUCCCAUCAUUUUAUUCCAUUU   67 Target Full Sequence	1.0	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
HI406713.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||||*|||||||||||||||| targets:170   GUCCCUCCAUUUUAUUCCAUUU   191 Target Full Sequence	1.0	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
JB167174.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   ||||||=||||||||||||||| targets:46   GUCCCAUCAUUUUAUUCCAUUU   67 Target Full Sequence	1.0	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
JB167174.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||||*|||||||||||||||| targets:170   GUCCCUCCAUUUUAUUCCAUUU   191 Target Full Sequence	1.0	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   ||||||=||||||||||||||| targets:46   GUCCCAUCAUUUUAUUCCAUUU   67 Target Full Sequence	1.0	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||||*|||||||||||||||| targets:170   GUCCCUCCAUUUUAUUCCAUUU   191 Target Full Sequence	1.0	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020547858.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   ||||||=||||||||||=|||| targets:1569   GUCCCAUCAUUUUAUUCUAUUU   1590 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA	NA	coding protein	psRNATarget
HI403040.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   ||||||=||||||||||=|||| targets:32   GUCCCAUCAUUUUAUUCUAUUU   53 Target Full Sequence	2.5	Sequence 1165 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235170.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   ||||||=||||||||||=|||| targets:32   GUCCCAUCAUUUUAUUCUAUUU   53 Target Full Sequence	2.5	Sequence 1165 from Patent EP2985353	NA	coding protein	psRNATarget
JB163501.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   ||||||=||||||||||=|||| targets:32   GUCCCAUCAUUUUAUUCUAUUU   53 Target Full Sequence	2.5	Sequence 1165 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||||*|||||||||||||||| targets:79   GUCCCUCCAUUUUAUUCCAUUU   100 Target Full Sequence	1.0	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
JB166880.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||||*|||||||||||||||| targets:79   GUCCCUCCAUUUUAUUCCAUUU   100 Target Full Sequence	1.0	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
HI406419.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||||*|||||||||||||||| targets:79   GUCCCUCCAUUUUAUUCCAUUU   100 Target Full Sequence	1.0	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||=|*|||||||||||||||| targets:2152   GUCUCUCCAUUUUAUUCCAUUU   2173 Target Full Sequence	2.0	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT063047.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||||*=||||||||||||||| targets:2100   GUCCCUUCAUUUUAUUCCAUUU   2121 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174830.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||||*=||||||||||||||| targets:2100   GUCCCUUCAUUUUAUUCCAUUU   2121 Target Full Sequence	2.0	Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA	NA	coding protein	psRNATarget
LQ235182.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||||*=||||||||||||||| targets:30   GUCCCUUCAUUUUAUUCCAUUU   51 Target Full Sequence	2.0	Sequence 1177 from Patent EP2985353	NA	coding protein	psRNATarget
JB163513.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||||*=||||||||||||||| targets:30   GUCCCUUCAUUUUAUUCCAUUU   51 Target Full Sequence	2.0	Sequence 1177 from Patent EP2559767	NA	coding protein	psRNATarget
HI403052.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||||*=||||||||||||||| targets:30   GUCCCUUCAUUUUAUUCCAUUU   51 Target Full Sequence	2.0	Sequence 1177 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008683103.2	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   *||||*||||||||||=||||| targets:2887   AUCCCUCCAUUUUAUUUCAUUU   2908 Target Full Sequence	2.5	PREDICTED: Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550478.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||||*=||||||||||||||* targets:2651   GUCCCUUCAUUUUAUUCCAUUG   2672 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA	NA	coding protein	psRNATarget
BT038140.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   *||||*||||||||||=||||| targets:888   AUCCCUCCAUUUUAUUUCAUUU   909 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0213P07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001143572.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   *||||*||||||||||=||||| targets:888   AUCCCUCCAUUUUAUUUCAUUU   909 Target Full Sequence	2.5	Zea mays Pre-mRNA-splicing factor 3 (LOC100217215), mRNA	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||||**||||||||||||||| targets:1000   GUCCCUACAUUUUAUUCCAUUU   1021 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945607.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||||*|||*|||||||||||| targets:144   GUCCCUCCAAUUUAUUCCAUUU   165 Target Full Sequence	2.5	Zea mays clone 279279 mRNA sequence	NA	coding protein	psRNATarget
NM_001305845.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   *||==*|||||||||||||||| targets:2085   AUCUUUCCAUUUUAUUCCAUUU   2106 Target Full Sequence	3.0	Zea mays uncharacterized LOC542022 (LOC542022), mRNA	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||=|**||||||||||||||| targets:843   GUCUCUACAUUUUAUUCCAUUU   864 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||=|**||||||||||||||| targets:843   GUCUCUACAUUUUAUUCCAUUU   864 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
BT017088.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |**||||||||||*|||||||* targets:152   GCACCACCAUUUUUUUCCAUUC   173 Target Full Sequence	2.5	Zea mays clone EL01N0360H06.c mRNA sequence	NA	coding protein	psRNATarget
EZ052166.1	ncRNA:22   CAGGGUGGUAAAAUAAGGUAAA   1   |||||***|||||||||||||| targets:780   GUCCCUAGAUUUUAUUCCAUUU   801 Target Full Sequence	3.0	TSA: Zea mays contig53286, mRNA sequence	NA	coding protein	psRNATarget