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BaseInfo

ncRNA ID osa-miRf10111-npr
Species Oryza sativa
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 21
Mature sequence(if miRNA) NA - GGUGACAGAAGAGAGUGAGCA - NA
Stem-loop(if miRNA)      G       -     -        A      UGUU   UU     AAU
GGAGG UGACAGA AGAGA GUGAGCAC CGUGGU    UCC  GCAUA   G
||||| ||||||| ||||| |||||||| ||||||    |||  |||||   A
CCUCC ACUGUCU UCUCU CACUCGUG GCAUCG    AGG  CGUAU   U
     -       C     U        C      ----   UU     CCG
Stem-loop sequence GGAGGGUGACAGAAGAGAGUGAGCACACGUGGUUGUUUCCUUGCAUAAAUGAUGCCUAUGCUUGGAGCUACGCGUGCUCACUUCUCUCUCUGUCACCUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_015767590.1
ncRNA:21   ACGAGUGAGAGAAGACAGUGG   1
  |||||*|||||||||||||=|
targets:849   UGCUCUCUCUCUUCUGUCAUC   869

2.5 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 4 (LOC4328461), transcript variant X2, mRNA squamosa promoter-binding-like protein 4(LOC4328461) coding protein psRNATarget
XM_015767589.1
ncRNA:21   ACGAGUGAGAGAAGACAGUGG   1
  |||||*|||||||||||||=|
targets:867   UGCUCUCUCUCUUCUGUCAUC   887

2.5 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 4 (LOC4328461), transcript variant X1, mRNA squamosa promoter-binding-like protein 4(LOC4328461) coding protein psRNATarget
XM_015779858.1
ncRNA:21   ACGAGUGAGAGAAGACAGUGG   1
  |||||*|||||||||||||=|
targets:819   UGCUCUCUCUCUUCUGUCAUC   839

2.5 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 7 (LOC4336597), mRNA squamosa promoter-binding-like protein 7(LOC4336597) coding protein psRNATarget
AK068749.1
ncRNA:21   ACGAGUGAGAGAAGACAGUGG   1
  |||||*|||||||||||||=|
targets:822   UGCUCUCUCUCUUCUGUCAUC   842

2.5 Oryza sativa Japonica Group cDNA clone:J013158C23, full insert sequence NA coding protein psRNATarget
AK066057.1
ncRNA:21   ACGAGUGAGAGAAGACAGUGG   1
  |||||*|||||||||||||=|
targets:982   UGCUCUCUCUCUUCUGUCAUC   1002

2.5 Oryza sativa Japonica Group cDNA clone:J013053E16, full insert sequence NA coding protein psRNATarget
XM_015762464.1
ncRNA:21   ACGAGUGAGAGAAGACAGUGG   1
  |||||*|||||||||||||=|
targets:1113   UGCUCUCUCUCUUCUGUCAUC   1133

2.5 PREDICTED: Oryza sativa Japonica Group putative squamosa promoter-binding-like protein 19 (LOC107276349), mRNA putative squamosa promoter-binding-like protein 19(LOC107276349) coding protein psRNATarget
XM_015767591.1
ncRNA:21   ACGAGUGAGAGAAGACAGUGG   1
  |||||*|||||||||||||=|
targets:987   UGCUCUCUCUCUUCUGUCAUC   1007

2.5 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 4 (LOC4328461), transcript variant X3, mRNA squamosa promoter-binding-like protein 4(LOC4328461) coding protein psRNATarget
XM_015755388.1
ncRNA:21   ACGAGUGAGAGAAGACAGUGG   1
  |||||*|||||||||||||=|
targets:1710   UGCUCUCUCUCUUCUGUCAUC   1730

2.5 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 18 (LOC4347516), transcript variant X2, mRNA squamosa promoter-binding-like protein 18(LOC4347516) coding protein psRNATarget
XM_015755387.1
ncRNA:21   ACGAGUGAGAGAAGACAGUGG   1
  |||||*|||||||||||||=|
targets:1728   UGCUCUCUCUCUUCUGUCAUC   1748

2.5 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 18 (LOC4347516), transcript variant X1, mRNA squamosa promoter-binding-like protein 18(LOC4347516) coding protein psRNATarget
AK068702.1
ncRNA:21   ACGAGUGAGAGAAGACAGUGG   1
  |||||*|||||||||||||=|
targets:2223   UGCUCUCUCUCUUCUGUCAUC   2243

2.5 Oryza sativa Japonica Group cDNA clone:J013159I15, full insert sequence NA coding protein psRNATarget
JC611924.1
ncRNA:21   ACGAGUGAGAGAAGACAGUGG   1
  |||||*|||||||||||||*|
targets:99   UGCUCUCUCUCUUCUGUCAAC   119

2.5 Sequence 86 from Patent WO2014106838 NA coding protein psRNATarget
AK063561.1
ncRNA:21   ACGAGUGAGAGAAGACAGUGG   1
  |||||*|||||||||||||*|
targets:676   UGCUCUCUCUCUUCUGUCAAC   696

2.5 Oryza sativa Japonica Group cDNA clone:001-117-F03, full insert sequence NA coding protein psRNATarget
XM_015786013.1
ncRNA:21   ACGAGUGAGAGAAGACAGUGG   1
  |||||*|||||||||||||*|
targets:850   UGCUCUCUCUCUUCUGUCAGC   870

2.5 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 11 (LOC107276066), mRNA squamosa promoter-binding-like protein 11(LOC107276066) coding protein psRNATarget
AK109469.1
ncRNA:21   ACGAGUGAGAGAAGACAGUGG   1
  |||||*|||||||||||||*|
targets:1055   UGCUCUCUCUCUUCUGUCAGC   1075

2.5 Oryza sativa Japonica Group cDNA clone:001-128-D02, full insert sequence NA coding protein psRNATarget
XM_015755476.1
ncRNA:21   ACGAGUGAGAGAAGACAGUGG   1
  |||||*|||||||||||||*|
targets:1434   UGCUCUCUCUCUUCUGUCAAC   1454

2.5 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 17 (LOC9266075), transcript variant X2, mRNA squamosa promoter-binding-like protein 17(LOC9266075) coding protein psRNATarget
XM_015755475.1
ncRNA:21   ACGAGUGAGAGAAGACAGUGG   1
  |||||*|||||||||||||*|
targets:1437   UGCUCUCUCUCUUCUGUCAAC   1457

2.5 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 17 (LOC9266075), transcript variant X1, mRNA squamosa promoter-binding-like protein 17(LOC9266075) coding protein psRNATarget
XM_015793891.1
ncRNA:21   ACGAGUGAGAGAAGACAGUGG   1
  |||||*|||||||||||||*|
targets:1507   UGCUCUCUCUCUUCUGUCAGC   1527

2.5 PREDICTED: Oryza sativa Japonica Group squamosa promoter-binding-like protein 16 (LOC4346133), mRNA squamosa promoter-binding-like protein 16(LOC4346133) coding protein psRNATarget
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