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BaseInfo

ncRNA ID	novel_zma_miR5127
Species	Zea mays
Class	miRNA
Genome position	Chr1:2990490-2990576 [-]
Reference genome	RefGen_v4
Source	SRR2287164;SRR4237222
Length	22
Mature sequence(if miRNA)	66 - AUCGAAGGGGAUUGGAGGGGGA - 87
Stem-loop(if miRNA)	--         GAUUG                AUC   AG    AA   AUCGAAGGG     GAGGGGGAUUAAAUCC   CCU  UCAA  U   |||||||||     ||||||||||||||||   |||  ||||  U   UAGCUUCCC     UUCCCCCUAAUUUAGG   GGA  AGUU  G CC         -AUAA                ---   --    AA
Stem-loop sequence	AUCGAAGGGGAUUGGAGGGGGAUUAAAUCCAUCCCUAGUCAAAAUUGAAUUGAAGGGGAUUUAAUCCCCCUUAAUACCCUUCGAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB166405.1	ncRNA:22   AGGGGGAGGUUAGGGGAAGCUA   1   *=|=|||||||||||||||||| targets:90   AUCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	1.0	Sequence 4069 from Patent EP2559767	NA	coding protein	psRNATarget
JB166408.1	ncRNA:22   AGGGGGAGGUUAGGGGAAGCUA   1   *=|=|||||||||||||||||| targets:90   AUCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	1.0	Sequence 4072 from Patent EP2559767	NA	coding protein	psRNATarget
HI405944.1	ncRNA:22   AGGGGGAGGUUAGGGGAAGCUA   1   *=|=|||||||||||||||||| targets:90   AUCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	1.0	Sequence 4069 from Patent EP2074227	NA	coding protein	psRNATarget
HI405947.1	ncRNA:22   AGGGGGAGGUUAGGGGAAGCUA   1   *=|=|||||||||||||||||| targets:90   AUCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	1.0	Sequence 4072 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238077.1	ncRNA:22   AGGGGGAGGUUAGGGGAAGCUA   1   *=|=|||||||||||||||||| targets:90   AUCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	1.0	Sequence 4072 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238074.1	ncRNA:22   AGGGGGAGGUUAGGGGAAGCUA   1   *=|=|||||||||||||||||| targets:90   AUCUCCUCCAAUCCCCUUCGAU   111 Target Full Sequence	1.0	Sequence 4069 from Patent EP2985353	NA	coding protein	psRNATarget
BT017268.1	ncRNA:22   AGGGGGAGGUUAGGGGAAGCUA   1   *=||||||||||||||||=||| targets:912   AUCCCCUCCAAUCCCCUUUGAU   933 Target Full Sequence	1.5	Zea mays clone EL01N0312A05.c mRNA sequence	NA	coding protein	psRNATarget
EZ069159.1	ncRNA:22   AGGGGGAGGUUAGGGGAAGCUA   1   |=||=||||||||||||||*|| targets:57   UUCCUCUCCAAUCCCCUUCAAU   78 Target Full Sequence	2.5	TSA: Zea mays contig04794, mRNA sequence	NA	coding protein	psRNATarget
AY106606.2	ncRNA:22   AGGGGGAGGUUAGGGGAAGCUA   1   *==|||||=||||||||||||| targets:503   AUUCCCUCUAAUCCCCUUCGAU   524 Target Full Sequence	1.0	Zea mays PCO135617 mRNA sequence	NA	coding protein	psRNATarget
BT085493.1	ncRNA:22   AGGGGGAGGUUAGGGGAAGCUA   1   *==|||||=||||||||||||| targets:783   AUUCCCUCUAAUCCCCUUCGAU   804 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0020K17 mRNA, complete cds	NA	coding protein	psRNATarget
JB166281.1	ncRNA:22   AGGGGGAGGUUAGGGGAAGCUA   1   **||||||=||||||||*|||| targets:203   AGCCCCUCUAAUCCCCUCCGAU   224 Target Full Sequence	2.5	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237950.1	ncRNA:22   AGGGGGAGGUUAGGGGAAGCUA   1   **||||||=||||||||*|||| targets:203   AGCCCCUCUAAUCCCCUCCGAU   224 Target Full Sequence	2.5	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
HI405820.1	ncRNA:22   AGGGGGAGGUUAGGGGAAGCUA   1   **||||||=||||||||*|||| targets:203   AGCCCCUCUAAUCCCCUCCGAU   224 Target Full Sequence	2.5	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
BT085111.1	ncRNA:22   AGGGGGAGGUUAGGGGAAGCUA   1   *=|*|*|||||||||||||||| targets:1404   AUCACAUCCAAUCCCCUUCGAU   1425 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0292J13 mRNA, complete cds	NA	coding protein	psRNATarget