Search result

BaseInfo

ncRNA ID	novel_zma_miR5124
Species	Zea mays
Class	miRNA
Genome position	Chr1:7177560-7177633 [-]
Reference genome	RefGen_v4
Source	SRR2287164;SRR1583941
Length	21
Mature sequence(if miRNA)	54 - UCACGGAGGGAUUGGAGGGGA - 74
Stem-loop(if miRNA)	--                    A    AA A     GA   UCACGGAGGGAUUGGAGGGG UUGA  G GAAAU  A   |||||||||||||||||||| ||||  | |||||   AGUGUUUCUCUAACCUCCCC AACU  C CUUUA  C CU                    -    CC -     AU
Stem-loop sequence	UCACGGAGGGAUUGGAGGGGAUUGAAAGAGAAAUGAACUAAUUUCCCCUCAACCCCUCCAAUCUCUUUGUGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403355.1	ncRNA:21   AGGGGAGGUUAGGGAGGCACU   1   |||||||||||||=||||||| targets:40   UCCCCUCCAAUCCUUCCGUGA   60 Target Full Sequence	1.5	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
JB163816.1	ncRNA:21   AGGGGAGGUUAGGGAGGCACU   1   |||||||||||||=||||||| targets:40   UCCCCUCCAAUCCUUCCGUGA   60 Target Full Sequence	1.5	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:21   AGGGGAGGUUAGGGAGGCACU   1   |||||||||||||=||||||| targets:40   UCCCCUCCAAUCCUUCCGUGA   60 Target Full Sequence	1.5	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:21   AGGGGAGGUUAGGGAGGCACU   1   |||||||=||||||||||||| targets:1808   UCCCCUCUAAUCCCUCCGUGA   1828 Target Full Sequence	1.0	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU945995.1	ncRNA:21   AGGGGAGGUUAGGGAGGCACU   1   ***|||||||||||||||||| targets:384   GAGCCUCCAAUCCCUCCGUGA   404 Target Full Sequence	1.0	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget
XM_020538633.1	ncRNA:21   AGGGGAGGUUAGGGAGGCACU   1   ***|||||||||||||*|||| targets:3785   GAGCCUCCAAUCCCUCAGUGA   3805 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008647808.2	ncRNA:21   AGGGGAGGUUAGGGAGGCACU   1   ***|||||||||||||*|||| targets:3898   GAGCCUCCAAUCCCUCAGUGA   3918 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020538630.1	ncRNA:21   AGGGGAGGUUAGGGAGGCACU   1   ***|||||||||||||*|||| targets:3937   GAGCCUCCAAUCCCUCAGUGA   3957 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538631.1	ncRNA:21   AGGGGAGGUUAGGGAGGCACU   1   ***|||||||||||||*|||| targets:4685   GAGCCUCCAAUCCCUCAGUGA   4705 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020538632.1	ncRNA:21   AGGGGAGGUUAGGGAGGCACU   1   ***|||||||||||||*|||| targets:4686   GAGCCUCCAAUCCCUCAGUGA   4706 Target Full Sequence	2.5	PREDICTED: Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), transcript variant X4, mRNA	NA	coding protein	psRNATarget
NM_001350089.1	ncRNA:21   AGGGGAGGUUAGGGAGGCACU   1   ***|||||||||||||*|||| targets:5748   GAGCCUCCAAUCCCUCAGUGA   5768 Target Full Sequence	2.5	Zea mays transcription factor TFIIIB component B'' homolog (LOC100304161), mRNA	NA	coding protein	psRNATarget