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BaseInfo

ncRNA ID	novel_zma_miR5122
Species	Zea mays
Class	miRNA
Genome position	Chr6:2401840-2401940 [-]
Reference genome	RefGen_v4
Source	SRR1618882
Length	24
Mature sequence(if miRNA)	78 - AACCCGGUUAGGAAUCGUUCCGAC - 101
Stem-loop(if miRNA)	--AAC                    C    C     AAU  AAGGCCCUAGU      CCGGUUAGGAAUCGUUCCGA CCAC AAUCC   AC           C      |||||||||||||||||||| |||| |||||   ||      GGCCAAUCUUUAGCAAGGCU GGUG UUAGG   GC           A CAUUA                    A    A     ---  GUUUGCUUGUU
Stem-loop sequence	AACCCGGUUAGGAAUCGUUCCGACCCACCAAUCCAAUACAAGGCCCUAGUCAUUGUUCGUUUGCGGGAUUAGUGGAUCGGAACGAUUUCUAACCGGAUUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI405939.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCCCAA   1   |||||||||||||||||||||*|| targets:37   GUCGGAACGAUUCCUAACCGGAUU   60 Target Full Sequence	1.5	Sequence 4064 from Patent EP2074227	NA	coding protein	psRNATarget
JB166401.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCCCAA   1   |||||||||||||||||||||*|| targets:37   GUCGGAACGAUUCCUAACCGGAUU   60 Target Full Sequence	1.5	Sequence 4065 from Patent EP2559767	NA	coding protein	psRNATarget
JB166400.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCCCAA   1   |||||||||||||||||||||*|| targets:37   GUCGGAACGAUUCCUAACCGGAUU   60 Target Full Sequence	1.5	Sequence 4064 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238069.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCCCAA   1   |||||||||||||||||||||*|| targets:37   GUCGGAACGAUUCCUAACCGGAUU   60 Target Full Sequence	1.5	Sequence 4064 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238070.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCCCAA   1   |||||||||||||||||||||*|| targets:37   GUCGGAACGAUUCCUAACCGGAUU   60 Target Full Sequence	1.5	Sequence 4065 from Patent EP2985353	NA	coding protein	psRNATarget
HI405940.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCCCAA   1   |||||||||||||||||||||*|| targets:37   GUCGGAACGAUUCCUAACCGGAUU   60 Target Full Sequence	1.5	Sequence 4065 from Patent EP2074227	NA	coding protein	psRNATarget
BT035415.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCCCAA   1   |||||||||||||||||||||*|| targets:1448   GUCGGAACGAUUCCUAACCGGAUU   1471 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0059N16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138362.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCCCAA   1   |||||||||||||||||||||*|| targets:1448   GUCGGAACGAUUCCUAACCGGAUU   1471 Target Full Sequence	1.5	Zea mays Enhanced ethylene response protein 5 (LOC100193209), mRNA	NA	coding protein	psRNATarget
XM_020549216.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCCCAA   1   |||||||||||||||||||||*|| targets:168   GUCGGAACGAUUCCUAACCGGAUU   191 Target Full Sequence	1.5	PREDICTED: Zea mays putative disease resistance protein RGA4 (LOC103649444), mRNA	NA	coding protein	psRNATarget
XM_008674095.2	ncRNA:24   CAGCCUUGCUAAGGAUUGGCCCAA   1   |||||||||||||||||||||*|| targets:2084   GUCGGAACGAUUCCUAACCGGAUU   2107 Target Full Sequence	1.5	PREDICTED: Zea mays putative MADS-box transcription factor family protein (MADS69), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020550140.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCCCAA   1   |||||||||||||||||||||*|| targets:3459   GUCGGAACGAUUCCUAACCGGAUU   3482 Target Full Sequence	1.5	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675573.2	ncRNA:24   CAGCCUUGCUAAGGAUUGGCCCAA   1   |||||||||||||||||||||*|| targets:3459   GUCGGAACGAUUCCUAACCGGAUU   3482 Target Full Sequence	1.5	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ109082.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCCCAA   1   ||||*||||||||||||||||*|| targets:44   GUCGAAACGAUUCCUAACCGGAUU   67 Target Full Sequence	1.5	TSA: Zea mays contig44741, mRNA sequence	NA	coding protein	psRNATarget
XM_020547654.1	ncRNA:24   CAGCCUUGCUAAGGAUUGGCCCAA   1   |||*|||||||||||||||||*|| targets:4369   GUCAGAACGAUUCCUAACCGGAUU   4392 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100279517 (LOC100279517), transcript variant X1, mRNA	NA	coding protein	psRNATarget