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BaseInfo

ncRNA ID novel_zma_miR5114
Species Zea mays
Class miRNA
Genome position Chr10:120678826-120678998 [-]
Reference genome RefGen_v4
Source SRR2287164
Length 21
Mature sequence(if miRNA) 1 - AUACAGUGGUAGAGUAGGCAA - 21
Stem-loop(if miRNA) --U  -          CA          A  A        C       A    A     CAA                 A   AUUUU
   CC ACUCUACCAC  UAUAAAAUUU AA UUCAAAUU AUCAUAU UUAA AGAUA   AAAGGAGAAAAUUCUGA AUA     C
   || ||||||||||  |||||||||| || |||||||| ||||||| |||| |||||   ||||||||||||||||| |||     A
   GG UGAGAUGGUG  AUAUUUUAAA UU AAGUUUAA UAGUAUA AAUU UCUAU   UUUUCUCUUUUAAGACU UAU     C
AAC  A          AC          G  C        A       C    C     ---                 C   GUUUU
Stem-loop sequence UCCACUCUACCACCAUAUAAAAUUUAAAAUUCAAAUUCAUCAUAUAUUAAAAGAUACAAAAAGGAGAAAAUUCUGAAAUAAUUUUCACUUUUGUAUCUCAGAAUUUUCUCUUUUUAUCUCUUAACAUAUGAUAAAUUUGAACUUGAAAUUUUAUACAGUGGUAGAGUAGGCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008657758.2
ncRNA:21   AACGGAUGAGAUGGUGACAUA   1
  |*||||||*|||||||||||*
targets:42   UAGCCUACGCUACCACUGUAG   62

2.5 PREDICTED: Zea mays methylesterase 7 (LOC103635265), mRNA NA coding protein psRNATarget