Search result

BaseInfo

ncRNA ID novel_zma_miR5107
Species Zea mays
Class miRNA
Genome position Chr6:103350784-103350919 [-]
Reference genome RefGen_v4
Source SRR1618882;SRR5105961;SRR5105963
Length 24
Mature sequence(if miRNA) 1 - UUGGGGUAUAACCGAACAUGGCCU - 24
Stem-loop(if miRNA) --   -           - UU                 AG        UAUGGAUUG A        UGA   A
  GCU UGUUCGGUUAU U  CAAUUCAUAUGGAUUGA  GGGAUUGA         G GGGGAUUU   CUU G
  ||| ||||||||||| |  |||||||||||||||||  ||||||||         | ||||||||   |||
  CGG ACAAGCCAAUA G  GUUAGGUAUACCUAACU  CCCUAACU         C CCCCUAAG   GGG U
UC   U           U GG                 CA        --------- -        UUA   A
Stem-loop sequence GCUUGUUCGGUUAUUUUCAAUUCAUAUGGAUUGAAGGGGAUUGAUAUGGAUUGGAGGGGAUUUUGACUUAGUAGGGAUUGAAUCCCCCUCAAUCCCACUCAAUCCAUAUGGAUUGGGGUAUAACCGAACAUGGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008677073.2
ncRNA:24   UCCGGUACAAGCCAAUAUGGGGUU   1
  |||=|*|||||||||||||||*||
targets:1807   AGGUCUUGUUCGGUUAUACCCAAA   1830

2.5 PREDICTED: Zea mays probable glycosyltransferase At5g03795 (LOC103651446), mRNA NA coding protein psRNATarget