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BaseInfo

ncRNA ID	novel_zma_miR5090
Species	Zea mays
Class	miRNA
Genome position	Chr9:25070536-25070614 [+]
Reference genome	RefGen_v4
Source	SRR2287164
Length	21
Mature sequence(if miRNA)	1 - AUCACGAGAGGAUUGGAGGGG - 21
Stem-loop(if miRNA)	--      A                    A A    UUA   AUCACG GAGGAUUGGAGGGGGUUGAG G GAAA   G   |||||| |||||||||||||||||||| | ||||   U   UAGUGC CUCCUAACCUCCCCUAACUC C CUUU   U CC      C                    A C    UAU
Stem-loop sequence	AUCACGAGAGGAUUGGAGGGGGUUGAGAGAGAAAUUAGUUUAUUUUCCCACUCAAUCCCCUCCAAUCCUCCCGUGAUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235623.1	ncRNA:21   GGGGAGGUUAGGAGAGCACUA   1   ||||||||||||||*|||||| targets:43   CCCCUCCAAUCCUCCCGUGAU   63 Target Full Sequence	1.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
HI403493.1	ncRNA:21   GGGGAGGUUAGGAGAGCACUA   1   ||||||||||||||*|||||| targets:43   CCCCUCCAAUCCUCCCGUGAU   63 Target Full Sequence	1.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
JB163954.1	ncRNA:21   GGGGAGGUUAGGAGAGCACUA   1   ||||||||||||||*|||||| targets:43   CCCCUCCAAUCCUCCCGUGAU   63 Target Full Sequence	1.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
EZ098881.1	ncRNA:21   GGGGAGGUUAGGAGAGCACUA   1   |||||||||||||||||*||| targets:88   CCCCUCCAAUCCUCUCGGGAU   108 Target Full Sequence	1.5	TSA: Zea mays contig34536, mRNA sequence	NA	coding protein	psRNATarget
EU968006.1	ncRNA:21   GGGG-AGGUUAGGAGAGCACUA   1   ||||-|||*||||||||||||| targets:233   CCCCAUCCCAUCCUCUCGUGAU   254 Target Full Sequence	3.0	Zea mays clone 312789 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150911.1	ncRNA:21   GGGG-AGGUUAGGAGAGCACUA   1   ||||-|||*||||||||||||| targets:233   CCCCAUCCCAUCCUCUCGUGAU   254 Target Full Sequence	3.0	Zea mays uncharacterized LOC100277310 (IDP717), mRNA	NA	coding protein	psRNATarget