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BaseInfo

ncRNA ID	novel_zma_miR5089
Species	Zea mays
Class	miRNA
Genome position	Chr10:92015747-92015832 [-]
Reference genome	RefGen_v4
Source	SRR2287164
Length	24
Mature sequence(if miRNA)	63 - AAUGGAGGAGAUUGAGGGGGCUAU - 86
Stem-loop(if miRNA)	--       GA              U              CAA   AAUGGAG  GAUUGAGGGGGCUA AAUCUUUCACUAUU   A   |||||||  |||||||||||||| ||||||||||||||   UUAUUUC  CUAGCUCUCCCGAU UUAGGGAGUGAUAA   A CA       AC              C              AUU
Stem-loop sequence	AAUGGAGGAGAUUGAGGGGGCUAUAAUCUUUCACUAUUCAAAAUUAAAUAGUGAGGGAUUCUAGCCCUCUCGAUCCACUUUAUUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654031.2	ncRNA:24   UAUCGGGGGAGUUAGAGGAGGUAA   1   *||||=|||||||||*|||||||| targets:1671   CUAGCUCCCUCAAUCCCCUCCAUU   1694 Target Full Sequence	2.5	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY108800.1	ncRNA:24   UAUCGGGGGAGUUAGAGGAGGUAA   1   **|||||=|||||||*|||||||| targets:779   CCAGCCCUCUCAAUCCCCUCCAUU   802 Target Full Sequence	2.5	Zea mays PCO127746 mRNA sequence	NA	coding protein	psRNATarget
XM_008645760.2	ncRNA:24   UAUCGGGGGAGUUAGAGGAGGUAA   1   **|||||=|||||||*|||||||| targets:1466   CCAGCCCUCUCAAUCCCCUCCAUU   1489 Target Full Sequence	2.5	PREDICTED: Zea mays Ubiquitin carboxyl-terminal hydrolase 2 (pco127746), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT062774.1	ncRNA:24   UAUCGGGGGAGUUAGAGGAGGUAA   1   *|=|=|||=||||||*|||||||| targets:200   UUGGUCCCUUCAAUCACCUCCAUU   223 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0344J23 mRNA, complete cds	NA	coding protein	psRNATarget
BT019141.1	ncRNA:24   UAUCGGGGGAGUUAGAGGAGGUAA   1   *|=|==|||||||||*|||||||| targets:641   UUGGUUCCCUCAAUCACCUCCAUU   664 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
NM_001175718.1	ncRNA:24   UAUCGGGG--GAGUUAGAGGAGGUAA   1   ***|||||--|||||||||||||||| targets:137   CGCGCCCCACCUCAAUCUCCUCCAUU   162 Target Full Sequence	2.5	Zea mays 2-hydroxyacyl-CoA lyase (IDP2389), mRNA	NA	coding protein	psRNATarget
BT066017.1	ncRNA:24   UAUCGGGG--GAGUUAGAGGAGGUAA   1   ***|||||--|||||||||||||||| targets:137   CGCGCCCCACCUCAAUCUCCUCCAUU   162 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158B24 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020542853.1	ncRNA:24   UAUCGGGGGAGUUAGAGGAGGUAA   1   *|=|=|||=||||||*|||||||| targets:1540   UUGGUCCCUUCAAUCACCUCCAUU   1563 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103636499), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542855.1	ncRNA:24   UAUCGGGGGAGUUAGAGGAGGUAA   1   *|=|=|||=||||||*|||||||| targets:1543   UUGGUCCCUUCAAUCACCUCCAUU   1566 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103636499), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020545025.1	ncRNA:24   UAUC-------GGGGGAGUUAGAGGAGGUAA   1   ||||-------|||*||||||||||||||*| targets:319   AUAGAUCUAAACCCACUCAAUCUCCUCCAAU   349 Target Full Sequence	2.5	PREDICTED: Zea mays Phosphoglycerate mutase-like protein AT74H (LOC100280403), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008652719.2	ncRNA:24   UAUCGGGGGAGUUAGAGGAGGUAA   1   =||**|||=||*|||||||||||| targets:19   GUACGCCCUUCCAUCUCCUCCAUU   42 Target Full Sequence	2.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC100194069), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008652722.2	ncRNA:24   UAUCGGGGGAGUUAGAGGAGGUAA   1   =||**|||=||*|||||||||||| targets:85   GUACGCCCUUCCAUCUCCUCCAUU   108 Target Full Sequence	2.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC100194069), transcript variant X5, mRNA	NA	coding protein	psRNATarget