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BaseInfo

ncRNA ID	novel_zma_miR5088
Species	Zea mays
Class	miRNA
Genome position	Chr9:20036157-20036250 [+]
Reference genome	RefGen_v4
Source	SRR2287164;SRR2287165
Length	24
Mature sequence(if miRNA)	1 - AAAACCGGAGAGGAUUGGAGGGGA - 24
Stem-loop(if miRNA)	--          AG           A       C   -         A   AAAACCGGAG  GAUUGGAGGGG UAAAAUC UCU CUUUAUUCA U   ||||||||||  ||||||||||| ||||||| ||| |||||||||   UUUUGGCCUC  CUAAUCUUCCC AUUUUAG AGA GGAAUAAGU G UG          CU           G       -   A         U
Stem-loop sequence	AAAACCGGAGAGGAUUGGAGGGGAUAAAAUCCUCUCUUUAUUCAAUGUUGAAUAAGGAAGAGAUUUUAGCCCUUCUAAUCUCCUCCGGUUUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008664337.2	ncRNA:24   AGGGGAGGUUAGGAGAGGCCAAAA   1   |=|=|||||||||||||||||||| targets:2086   UUCUCUCCAAUCCUCUCCGGUUUU   2109 Target Full Sequence	0.0	PREDICTED: Zea mays ABC transporter F family member 1 (LOC103640881), mRNA	NA	coding protein	psRNATarget
XM_020543912.1	ncRNA:24   AGGGGAGGUUAGGAGAGGCCAAAA   1   *|||||||||||||=||||||||| targets:4129   GCCCCUCCAAUCCUUUCCGGUUUU   4152 Target Full Sequence	1.5	PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:24   AGGGGAGGUUAGGAGAGGCCAAAA   1   *|||||=||||||*|||||||||| targets:1115   GCCCCUUCAAUCCCCUCCGGUUUU   1138 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
XM_008647761.2	ncRNA:24   AGGGGAGGUUAGGAGAGGCCAAAA   1   *=|=|||=||||||||||||*||| targets:940   GUCUCUCUAAUCCUCUCCGGAUUU   963 Target Full Sequence	2.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008647760.2	ncRNA:24   AGGGGAGGUUAGGAGAGGCCAAAA   1   *=|=|||=||||||||||||*||| targets:940   GUCUCUCUAAUCCUCUCCGGAUUU   963 Target Full Sequence	2.5	PREDICTED: Zea mays E3 ubiquitin-protein ligase RMA1H1 (LOC103627470), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EU957568.1	ncRNA:24   AGGGGAGGUUAGGAGAGGCCAAAA   1   *|*|*||||||=|||||||||||| targets:917   GCGCAUCCAAUUCUCUCCGGUUUU   940 Target Full Sequence	1.5	Zea mays clone 1597470 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget