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BaseInfo

ncRNA ID	novel_zma_miR5087
Species	Zea mays
Class	miRNA
Genome position	Chr5:220041937-220042050 [+]
Reference genome	RefGen_v4
Source	SRR1618882
Length	24
Mature sequence(if miRNA)	1 - AAUUCCCUGUAUGCCACUGAAAAA - 24
Stem-loop(if miRNA)	--A                   AAA      UCAUUCCUUGUAUGUCACUGGCCCCAC    AUUCCCUGUAUGCCACUGA   AUAUAC                           A    |||||||||||||||||||   ||||||    UAGGGGACAUACGGUGACU   ACCGUA                           U UAA                   --C      UAUCCAUAUAAAAAACCACAGAUACUG
Stem-loop sequence	AAUUCCCUGUAUGCCACUGAAAAAUAUACUCAUUCCUUGUAUGUCACUGGCCCCACAUGUCAUAGACACCAAAAAAUAUACCUAUAUGCCACUCAGUGGCAUACAGGGGAUAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU942982.1	ncRNA:24   AAAAAGUCACCGUAUGUCCCUUAA   1   ||||*||||||||||||||||||| targets:125   UUUUCCAGUGGCAUACAGGGAAUU   148 Target Full Sequence	0.0	Zea mays clone 1548806 mRNA sequence	NA	coding protein	psRNATarget
EU956996.1	ncRNA:24   AAAAAGUCACCGUAUGUCCCUUAA   1   ||||*||||||||||||||||||| targets:1655   UUUUCCAGUGGCAUACAGGGAAUU   1678 Target Full Sequence	0.0	Zea mays clone 1579828 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU956996.1	ncRNA:24   AAAAAGUCACCGUAUGUCCCUUAA   1   *****||||||||||||*|||||* targets:1625   GGGGCCAGUGGCAUACAAGGAAUG   1648 Target Full Sequence	2.5	Zea mays clone 1579828 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU967272.1	ncRNA:24   AAAAAGUCACCGUAUGUCCCUUAA   1   ||||*||||||||||||*|||||* targets:630   UUUUCCAGUGGCAUACAAGGAAUG   653 Target Full Sequence	2.5	Zea mays clone 300934 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU967272.1	ncRNA:24   AAAAAGUCACCGUAUGUCCCUUAA   1   ****|||||||||||||*|||||* targets:600   GGGGUCAGUGGCAUACAAGGAAUG   623 Target Full Sequence	2.5	Zea mays clone 300934 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget