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BaseInfo

ncRNA ID	novel_zma_miR5085
Species	Zea mays
Class	miRNA
Genome position	Chr9:90223559-90223668 [-]
Reference genome	RefGen_v4
Source	SRR2287164
Length	22
Mature sequence(if miRNA)	89 - UUGGGAGCAAAGGGAUUGGAGG - 110
Stem-loop(if miRNA)	--          A            A         U                  A   UUGGGAGCAA GGGAUUGGAGGG AUUGAGGGG CUAGAAUCCCCUUAUUCA A   |||||||||| |||||||||||| ||||||||| ||||||||||||||||||   AACCCUCGUU CCUUAACCUCCU UAACUCCCC GAUCUUAGGGGAAUAAGU A CA          C            A         C                  U
Stem-loop sequence	UUGGGAGCAAAGGGAUUGGAGGGAAUUGAGGGGUCUAGAAUCCCCUUAUUCAAAAUUGAAUAAGGGGAUUCUAGCCCCCUCAAUAUCCUCCAAUUCCCUUGCUCCCAAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020546477.1	ncRNA:22   GGAGGUUAGGGAAACGAGGGUU   1   ||||||=||||||||||||||| targets:23   CCUCCAGUCCCUUUGCUCCCAA   44 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103638694 (LOC103638694), mRNA	NA	coding protein	psRNATarget
EZ111105.1	ncRNA:22   GGAGGUUAGGGAAACGAGGGUU   1   |||=|||||*|||||||||||| targets:2   CCUUCAAUCGCUUUGCUCCCAA   23 Target Full Sequence	2.5	TSA: Zea mays contig46766, mRNA sequence	NA	coding protein	psRNATarget
BT017823.1	ncRNA:22   GGAGGUUAGGGAAACGAGGGUU   1   =||=||||||*||||||||||| targets:865   UCUUCAAUCCAUUUGCUCCCAA   886 Target Full Sequence	2.5	Zea mays clone EL01N0508B10.c mRNA sequence	NA	coding protein	psRNATarget
XM_008651631.2	ncRNA:22   GGAGGUUAGGGAAACGAGGGUU   1   =||=||||||*||||||||||| targets:3493   UCUUCAAUCCAUUUGCUCCCAA   3514 Target Full Sequence	2.5	PREDICTED: Zea mays Topoisomerase II-associated protein PAT1 (LOC103630586), mRNA	NA	coding protein	psRNATarget