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BaseInfo

ncRNA ID	novel_zma_miR5084
Species	Zea mays
Class	miRNA
Genome position	Chr9:143820582-143820700 [-]
Reference genome	RefGen_v4
Source	SRR2287164
Length	24
Mature sequence(if miRNA)	1 - AAUGGUAUAAAAUAGAGGGACUAA - 24
Stem-loop(if miRNA)	--       UC       U    C     C                UG    G         AGUCCUU  AUUUUAU CUAU UUAGU CCUAAAUUAUUAAAUG  GAAA UAAAAUA   |||||||  ||||||| |||| ||||| ||||||||||||||||  |||| ||||||G   UCAGGGA  UAAAAUA GGUA AAUCA GGAUUUAAUGGUUUAU  CUUU AUUUUGA AA       GA       U    A     U                GU    G
Stem-loop sequence	AGUCCUUUCAUUUUAUUCUAUCUUAGUCCCUAAAUUAUUAAAUGUGGAAAGUAAAAUAGAGUUUUAGUUUCUGUAUUUGGUAAUUUAGGUACUAAAAUGGUAUAAAAUAGAGGGACUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT019141.1	ncRNA:24   AAUCAGGGAGAUAAAAUAUGGUAA   1   ||||||||||*|||||||*||||| targets:292   UUAGUCCCUCCAUUUUAUUCCAUU   315 Target Full Sequence	2.5	Zea mays clone Contig786.F mRNA sequence	NA	coding protein	psRNATarget
HI406713.1	ncRNA:24   AAUCAGGGAGAUAAAAUAUGGUAA   1   ||||||||||*|||||||*||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238843.1	ncRNA:24   AAUCAGGGAGAUAAAAUAUGGUAA   1   ||||||||||*|||||||*||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2985353	NA	coding protein	psRNATarget
JB167174.1	ncRNA:24   AAUCAGGGAGAUAAAAUAUGGUAA   1   ||||||||||*|||||||*||||| targets:167   UUAGUCCCUCCAUUUUAUUCCAUU   190 Target Full Sequence	2.5	Sequence 4838 from Patent EP2559767	NA	coding protein	psRNATarget
JB166880.1	ncRNA:24   AAUCAGGGAGAUAAAAUAUGGUAA   1   ||||||||||*|||||||*||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238549.1	ncRNA:24   AAUCAGGGAGAUAAAAUAUGGUAA   1   ||||||||||*|||||||*||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2985353	NA	coding protein	psRNATarget
HI406419.1	ncRNA:24   AAUCAGGGAGAUAAAAUAUGGUAA   1   ||||||||||*|||||||*||||| targets:76   UUAGUCCCUCCAUUUUAUUCCAUU   99 Target Full Sequence	2.5	Sequence 4544 from Patent EP2074227	NA	coding protein	psRNATarget