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BaseInfo

ncRNA ID	novel_zma_miR5083
Species	Zea mays
Class	miRNA
Genome position	Chr8:170037597-170037644 [+]
Reference genome	RefGen_v4
Source	SRR2287164
Length	24
Mature sequence(if miRNA)	25 - CUAAAUUUAGAGGAUGCUGCUGGA - 48
Stem-loop(if miRNA)	--                 --C  U   CAGCAGCGUCCUCUAAA   GG C   |||||||||||||||||   ||   GUCGUCGUAGGAGAUUU   UC C AG                 AAA  U
Stem-loop sequence	CAGCAGCGUCCUCUAAACGGUCCUCUAAAUUUAGAGGAUGCUGCUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ237980.1	ncRNA:24   AGGUCGUCGUAGGAGAUUUAAAUC   1   |=|||||||=|||||||||||||| targets:10   UUCAGCAGCGUCCUCUAAAUUUAG   33 Target Full Sequence	1.0	Sequence 3975 from Patent EP2985353	NA	coding protein	psRNATarget
HI405850.1	ncRNA:24   AGGUCGUCGUAGGAGAUUUAAAUC   1   |=|||||||=|||||||||||||| targets:10   UUCAGCAGCGUCCUCUAAAUUUAG   33 Target Full Sequence	1.0	Sequence 3975 from Patent EP2074227	NA	coding protein	psRNATarget
JB166311.1	ncRNA:24   AGGUCGUCGUAGGAGAUUUAAAUC   1   |=|||||||=|||||||||||||| targets:10   UUCAGCAGCGUCCUCUAAAUUUAG   33 Target Full Sequence	1.0	Sequence 3975 from Patent EP2559767	NA	coding protein	psRNATarget
EZ099679.1	ncRNA:24   AGGUCGUCGUAGGAGAUUUAAAUC   1   ||||||||==|||||||||||||| targets:104   UCCAGCAGUGUCCUCUAAAUUUAG   127 Target Full Sequence	2.0	TSA: Zea mays contig35334, mRNA sequence	NA	coding protein	psRNATarget
BT085234.2	ncRNA:24   AGGUCGUCGUAGGAGAUUUAAAUC   1   |||||=|||=|||||||||||||| targets:7   UCCAGUAGCGUCCUCUAAAUUUAG   30 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0338D09 mRNA, complete cds	NA	coding protein	psRNATarget
JB166315.1	ncRNA:24   AGGUCGUCGUAGGAGAUUUAAAUC   1   ||||*||||=|=|||||||||||| targets:10   UCCAUCAGCGUUCUCUAAAUUUAG   33 Target Full Sequence	2.5	Sequence 3979 from Patent EP2559767	NA	coding protein	psRNATarget
HI405854.1	ncRNA:24   AGGUCGUCGUAGGAGAUUUAAAUC   1   ||||*||||=|=|||||||||||| targets:10   UCCAUCAGCGUUCUCUAAAUUUAG   33 Target Full Sequence	2.5	Sequence 3979 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237984.1	ncRNA:24   AGGUCGUCGUAGGAGAUUUAAAUC   1   ||||*||||=|=|||||||||||| targets:10   UCCAUCAGCGUUCUCUAAAUUUAG   33 Target Full Sequence	2.5	Sequence 3979 from Patent EP2985353	NA	coding protein	psRNATarget
JB166308.1	ncRNA:24   AGGU--CGUCGUAGGAGAUUUAAAUC   1   *|||--|||||=|||||||||||||* targets:9   ACCAAAGCAGCGUCCUCUAAAUUUAA   34 Target Full Sequence	2.0	Sequence 3972 from Patent EP2559767	NA	coding protein	psRNATarget
HI405847.1	ncRNA:24   AGGU--CGUCGUAGGAGAUUUAAAUC   1   *|||--|||||=|||||||||||||* targets:9   ACCAAAGCAGCGUCCUCUAAAUUUAA   34 Target Full Sequence	2.0	Sequence 3972 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237977.1	ncRNA:24   AGGU--CGUCGUAGGAGAUUUAAAUC   1   *|||--|||||=|||||||||||||* targets:9   ACCAAAGCAGCGUCCUCUAAAUUUAA   34 Target Full Sequence	2.0	Sequence 3972 from Patent EP2985353	NA	coding protein	psRNATarget
EU943313.1	ncRNA:24   AGGUCGUCGUAGGAGAUUUAAAUC   1   |=|*|||||=||||||||||||*| targets:575   UUCUGCAGCGUCCUCUAAAUUUCG   598 Target Full Sequence	2.5	Zea mays clone 1596440 mRNA sequence	NA	coding protein	psRNATarget