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BaseInfo

ncRNA ID	novel_zma_miR5082
Species	Zea mays
Class	miRNA
Genome position	Chr8:166635768-166635911 [+]
Reference genome	RefGen_v4
Source	SRR1583941
Length	22
Mature sequence(if miRNA)	1 - UAAGGGUGUGUUUGAUUCAGCU - 22
Stem-loop(if miRNA)	--UA      U   -      AGCUUUCUA     ----      -     ---GA       ---------AAAU    AC     AGGGUG GUU UGAUUC         AACUA    AAUUUG CUGUU     GAGUUUG             CCCA  C     |||||| ||| ||||||         |||||    |||||| |||||     |||||||             ||||     UCCCAU CGG AUUAAG         UUGAU    UUAGAC GGUAA     CUUAGAU             GGGU  A UAAA      U   C      --ACUUAAC     CUCC      C     AAAUG       AAUACAACAAUAU    AA
Stem-loop sequence	UAAGGGUGUGUUUGAUUCAGCUUUCUAAACUAAAUUUGCUGUUGAGAGUUUGAAAUCCCAACCAAAUGGGUAUAACAACAUAAUAGAUUCGUAAAAAUGGCCAGAUUCCUCUAGUUCAAUUCAGAAUUACGGCUUACCCUAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU945315.1	ncRNA:22   UCGACUUAGUUUGUGUGGGAAU   1   *|||*|||||||||||=||||| targets:506   UGCUUAAUCAAACACAUCCUUA   527 Target Full Sequence	2.5	Zea mays clone 257965 mRNA sequence	NA	coding protein	psRNATarget
XM_008651828.2	ncRNA:22   UCGACUUAGUUUGUGUGGGAAU   1   |||||||*||||||*||||||| targets:478   AGCUGAAACAAACAGACCCUUA   499 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At1g15510, chloroplastic (LOC103630763), mRNA	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:22   UCGACUUAGUUUGUGUGGGAAU   1   |*=|*||||||||||||||||| targets:1688   ACUUCAAUCAAACACACCCUUA   1709 Target Full Sequence	1.0	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658241.2	ncRNA:22   UCGACUUAGUUUGUGUGGGAAU   1   |*=|*||||||||||||||||| targets:1799   ACUUCAAUCAAACACACCCUUA   1820 Target Full Sequence	1.0	PREDICTED: Zea mays probable peptidyl-tRNA hydrolase 2 (LOC103635865), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU947237.1	ncRNA:22   UCGACUUAGUUUGUGUGGGAAU   1   *|*||||*||||||||=||||| targets:405   UGGUGAACCAAACACAUCCUUA   426 Target Full Sequence	2.5	Zea mays clone 334284 mRNA sequence	NA	coding protein	psRNATarget
XM_008652616.2	ncRNA:22   UCGA-CUUAGUUUGUGUGGGAAU   1   **||-|||*|||||||||||||| targets:2   UCCUCGAACCAAACACACCCUUA   24 Target Full Sequence	3.0	PREDICTED: Zea mays putative mitochondrial adenine nucleotide transporter BTL1 (LOC100192104), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ101531.1	ncRNA:22   UCGACUUAGUUUGUGUGGGAAU   1   **||*||*|||||||||||||| targets:34   CACUAAACCAAACACACCCUUA   55 Target Full Sequence	2.0	TSA: Zea mays contig37187, mRNA sequence	NA	coding protein	psRNATarget
EZ078768.1	ncRNA:22   UCGACUUAGUUUGUGUGGGAAU   1   **||*|||||||||||||||*| targets:84   UCCUCAAUCAAACACACCCUAA   105 Target Full Sequence	2.5	TSA: Zea mays contig14407, mRNA sequence	NA	coding protein	psRNATarget
XM_020545693.1	ncRNA:22   UCGAC-UUAGUUUGUGUGGGAAU   1   **=||-||*|||||||||||||| targets:3638   CAUUGCAACCAAACACACCCUUA   3660 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103641151 (LOC103641151), mRNA	NA	coding protein	psRNATarget