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BaseInfo

ncRNA ID novel_zma_miR5081
Species Zea mays
Class miRNA
Genome position Chr8:152944175-152944243 [+]
Reference genome RefGen_v4
Source SRR2287164
Length 23
Mature sequence(if miRNA) 47 - GGAUUGAUACGGAUUGAGGGGGA - 69
Stem-loop(if miRNA) --        GG  UGU      A          A
  CCUUUCAG  CU   UCGGUU UUUUCAAUCC U
  ||||||||  ||   |||||| ||||||||||
  GGGGAGUU  GG   AGUUAG GGAAGUUAGG A
AG        -A  CAU      G          U
Stem-loop sequence CCUUUCAGGGCUUGUUCGGUUAUUUUCAAUCCAUAUGGAUUGAAGGGGAUUGAUACGGAUUGAGGGGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020539810.1
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  ||||==|||||||||||||||||
targets:683   UCCCUUUCAAUCCGUAUCAAUCC   705

2.0 PREDICTED: Zea mays uncharacterized LOC109940330 (LOC109940330), mRNA NA coding protein psRNATarget
EU965203.1
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  ||=|||||||||||||||||||*
targets:872   UCUCCCUCAAUCCGUAUCAAUCA   894

1.0 Zea mays clone 284456 threonine endopeptidase mRNA, complete cds NA coding protein psRNATarget
NM_001156482.1
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  ||=|||||||||||||||||||*
targets:872   UCUCCCUCAAUCCGUAUCAAUCA   894

1.0 Zea mays threonine endopeptidase (LOC100283581), mRNA NA coding protein psRNATarget
EU972046.1
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  |||||=*||||||||||||||||
targets:768   UCCCCUCCAAUCCGUAUCAAUCC   790

2.0 Zea mays clone 373861 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_020548080.1
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  |||||=*||||||||||||||||
targets:1031   UCCCCUCCAAUCCGUAUCAAUCC   1053

2.0 PREDICTED: Zea mays translation initiation factor IF-2-like (LOC109943947), mRNA NA coding protein psRNATarget
BT055467.1
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  |||||=*||||||||||||||||
targets:1069   UCCCCUCCAAUCCGUAUCAAUCC   1091

2.0 Zea mays full-length cDNA clone ZM_BFb0279E03 mRNA, complete cds NA coding protein psRNATarget
BT064472.1
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  |||||=*||||||||||||||||
targets:1405   UCCCCUCCAAUCCGUAUCAAUCC   1427

2.0 Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds NA coding protein psRNATarget
BT040193.1
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  |||||=*||||||||||||||||
targets:1449   UCCCCUCCAAUCCGUAUCAAUCC   1471

2.0 Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds NA coding protein psRNATarget
AY105910.1
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  |||||=*||||||||||||||||
targets:1467   UCCCCUCCAAUCCGUAUCAAUCC   1489

2.0 Zea mays PCO106969 mRNA sequence NA coding protein psRNATarget
NM_001148011.2
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  |||||=*||||||||||||||||
targets:1481   UCCCCUCCAAUCCGUAUCAAUCC   1503

2.0 Zea mays uncharacterized LOC100273594 (AY105910), mRNA NA coding protein psRNATarget
BT041454.1
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  |||||=*||||||||||||||||
targets:1481   UCCCCUCCAAUCCGUAUCAAUCC   1503

2.0 Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds NA coding protein psRNATarget
XM_008673290.2
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  ||||=|*||||||||||||||||
targets:1964   UCCCUCCCAAUCCGUAUCAAUCC   1986

2.0 PREDICTED: Zea mays uncharacterized LOC103648912 (LOC103648912), mRNA NA coding protein psRNATarget
XM_020548987.1
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  ||||=|*||||||||||||||||
targets:1964   UCCCUCCCAAUCCGUAUCAAUCC   1986

2.0 PREDICTED: Zea mays uncharacterized LOC103648913 (LOC103648913), mRNA NA coding protein psRNATarget
XM_008658561.2
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  |||||=*||||||||||||||||
targets:285   UCCCCUCCAAUCCGUAUCAAUCC   307

2.0 PREDICTED: Zea mays mitogen-activated protein kinase kinase kinase 2 (LOC103636208), mRNA NA coding protein psRNATarget
NM_001348011.1
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  ||=|=||||||||*|||||||||
targets:429   UCUCUCUCAAUCCAUAUCAAUCC   451

2.5 Zea mays hypothetical protein (LOC100277538), mRNA NA coding protein psRNATarget
EU953075.1
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  ||=|||*|||||||||||||||=
targets:992   UCUCCCCCAAUCCGUAUCAAUCU   1014

2.0 Zea mays clone 1380292 mRNA sequence NA coding protein psRNATarget
XM_020545207.1
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  ||=|=|*||||||||||||||||
targets:6   UCUCUCCCAAUCCGUAUCAAUCC   28

2.0 PREDICTED: Zea mays solute carrier family 25 member 44 (LOC100384216), mRNA NA coding protein psRNATarget
BT055069.1
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  ||||==*||||||||||||||||
targets:960   UCCCUUCCAAUCCGUAUCAAUCC   982

3.0 Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds NA coding protein psRNATarget
EU956568.1
ncRNA:23   AGGGGGAG-UUAGGCAUAGUUAGG   1
  *=||=|||-|||||||||||||||
targets:1613   AUCCUCUCUAAUCCGUAUCAAUCC   1636

3.0 Zea mays clone 1566799 mRNA sequence NA coding protein psRNATarget
XM_008657761.2
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  ***|||||=||||||=|||||||
targets:422   CAACCCUCGAUCCGUGUCAAUCC   444

2.5 PREDICTED: Zea mays transcription factor IIIB 90 kDa subunit-like (LOC103635274), transcript variant X1, mRNA NA coding protein psRNATarget
NM_001346889.1
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  ***|||||=||||||=|||||||
targets:417   CAACCCUCGAUCCGUGUCAAUCC   439

2.5 Zea mays transcription factor IIIB 90 kDa subunit-like (LOC103635274), mRNA NA coding protein psRNATarget
XM_008657762.2
ncRNA:23   AGGGGGAGUUAGGCAUAGUUAGG   1
  ***|||||=||||||=|||||||
targets:422   CAACCCUCGAUCCGUGUCAAUCC   444

2.5 PREDICTED: Zea mays transcription factor IIIB 90 kDa subunit-like (LOC103635274), transcript variant X2, mRNA NA coding protein psRNATarget
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