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BaseInfo

ncRNA ID	novel_zma_miR5078
Species	Zea mays
Class	miRNA
Genome position	Chr5:198004065-198004160 [+]
Reference genome	RefGen_v4
Source	SRR1618882;SRR4237221;SRR4237227
Length	24
Mature sequence(if miRNA)	73 - AACACAUGUGGAUUGAGAUCAAUA - 96
Stem-loop(if miRNA)	--    C A            A              GG          A   UUGA C CAAUCCACAUGU UUGAGGUGGAUUGG  GUGUAACUUG A   |||| | |||||||||||| ||||||||||||||  ||||||||||   AACU G GUUAGGUGUACA AACUCCACCUAACC  UACAUUGAAU A AU    A A            C              --          C
Stem-loop sequence	UUGACCACAAUCCACAUGUAUUGAGGUGGAUUGGGGGUGUAACUUGAAACUAAGUUACAUCCAAUCCACCUCAACACAUGUGGAUUGAGAUCAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020543503.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:1815   UAUUGACCUCAAUCCACAUGUGUU   1838 Target Full Sequence	1.0	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543504.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:1814   UAUUGACCUCAAUCCACAUGUGUU   1837 Target Full Sequence	1.0	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT085393.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||||||||||||||||*||| targets:1559   UAUUGAUCUCAAUCCACAUGAGUU   1582 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0006K23 mRNA, complete cds	NA	coding protein	psRNATarget
JB163723.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1387 from Patent EP2559767	NA	coding protein	psRNATarget
HI403263.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1388 from Patent EP2074227	NA	coding protein	psRNATarget
HI403229.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1354 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235506.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1501 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235450.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1445 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235359.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1354 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235449.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1444 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235392.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1387 from Patent EP2985353	NA	coding protein	psRNATarget
JB163724.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1388 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235393.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1388 from Patent EP2985353	NA	coding protein	psRNATarget
HI403321.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1446 from Patent EP2074227	NA	coding protein	psRNATarget
HI403320.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1445 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235451.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1446 from Patent EP2985353	NA	coding protein	psRNATarget
JB163837.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1501 from Patent EP2559767	NA	coding protein	psRNATarget
JB163782.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1446 from Patent EP2559767	NA	coding protein	psRNATarget
JB163780.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1444 from Patent EP2559767	NA	coding protein	psRNATarget
JB163690.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1354 from Patent EP2559767	NA	coding protein	psRNATarget
HI403262.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1387 from Patent EP2074227	NA	coding protein	psRNATarget
HI403376.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1501 from Patent EP2074227	NA	coding protein	psRNATarget
HI403319.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1444 from Patent EP2074227	NA	coding protein	psRNATarget
JB163781.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:6   UAUUGACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1445 from Patent EP2559767	NA	coding protein	psRNATarget
HI403075.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:5   UAUUGACCUCAAUCCACAUGUGUU   28 Target Full Sequence	1.0	Sequence 1200 from Patent EP2074227	NA	coding protein	psRNATarget
JB163536.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:5   UAUUGACCUCAAUCCACAUGUGUU   28 Target Full Sequence	1.0	Sequence 1200 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235205.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||||| targets:5   UAUUGACCUCAAUCCACAUGUGUU   28 Target Full Sequence	1.0	Sequence 1200 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239082.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||*||||||||||||||||||| targets:5   UAUUCAUCUCAAUCCACAUGUGUU   28 Target Full Sequence	0.0	Sequence 5077 from Patent EP2985353	NA	coding protein	psRNATarget
HI406952.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||*||||||||||||||||||| targets:5   UAUUCAUCUCAAUCCACAUGUGUU   28 Target Full Sequence	0.0	Sequence 5077 from Patent EP2074227	NA	coding protein	psRNATarget
JB167413.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||*||||||||||||||||||| targets:5   UAUUCAUCUCAAUCCACAUGUGUU   28 Target Full Sequence	0.0	Sequence 5077 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008650840.2	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*|||||*||||||||||| targets:3368   UAUUGACCUCAACCCACAUGUGUU   3391 Target Full Sequence	2.5	PREDICTED: Zea mays two-component response regulator ORR24 (LOC103629724), mRNA	NA	coding protein	psRNATarget
XM_008650840.2	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||||*|||*||||||||||| targets:3486   UAUUGAUCGCAACCCACAUGUGUU   3509 Target Full Sequence	2.5	PREDICTED: Zea mays two-component response regulator ORR24 (LOC103629724), mRNA	NA	coding protein	psRNATarget
XM_008659899.2	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*|||||||*||||||||| targets:2066   UAUUGACCUCAAUCAACAUGUGUU   2089 Target Full Sequence	2.5	PREDICTED: Zea mays carotene epsilon-monooxygenase, chloroplastic (LOC103637620), mRNA	NA	coding protein	psRNATarget
BT070204.2	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||*||||||||||||||*|||| targets:917   UAUUAAUCUCAAUCCACAUAUGUU   940 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0171F04 mRNA, complete cds	NA	coding protein	psRNATarget
JB163822.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||*|*||||||||||||||||| targets:6   UAUUAACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1486 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235491.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||*|*||||||||||||||||| targets:6   UAUUAACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1486 from Patent EP2985353	NA	coding protein	psRNATarget
HI403361.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||*|*||||||||||||||||| targets:6   UAUUAACCUCAAUCCACAUGUGUU   29 Target Full Sequence	1.0	Sequence 1486 from Patent EP2074227	NA	coding protein	psRNATarget
JB163478.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||*|| targets:5   UAUUGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1142 from Patent EP2559767	NA	coding protein	psRNATarget
HI403017.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||*|| targets:5   UAUUGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1142 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235147.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||||*||||||||||||||*|| targets:5   UAUUGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1142 from Patent EP2985353	NA	coding protein	psRNATarget
HI402950.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   *|||||*||||||||||||||*|| targets:5   CAUUGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1075 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235080.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   *|||||*||||||||||||||*|| targets:5   CAUUGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1075 from Patent EP2985353	NA	coding protein	psRNATarget
JB163411.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   *|||||*||||||||||||||*|| targets:5   CAUUGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1075 from Patent EP2559767	NA	coding protein	psRNATarget
JB163470.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||*|*||||||||||||||*|| targets:5   UAUUCACCUCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1134 from Patent EP2559767	NA	coding protein	psRNATarget
HI403009.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||*|*||||||||||||||*|| targets:5   UAUUCACCUCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1134 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235139.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||*|*||||||||||||||*|| targets:5   UAUUCACCUCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1134 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235181.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   |||*||||*||||||||||||*|| targets:5   UAUAGAUCCCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1176 from Patent EP2985353	NA	coding protein	psRNATarget
HI403051.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   |||*||||*||||||||||||*|| targets:5   UAUAGAUCCCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1176 from Patent EP2074227	NA	coding protein	psRNATarget
JB163512.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   |||*||||*||||||||||||*|| targets:5   UAUAGAUCCCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1176 from Patent EP2559767	NA	coding protein	psRNATarget
JB163457.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||*|*||||||||||||||*|| targets:5   UAUUCACCUCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1121 from Patent EP2559767	NA	coding protein	psRNATarget
HI402996.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||*|*||||||||||||||*|| targets:5   UAUUCACCUCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1121 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235126.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   ||||*|*||||||||||||||*|| targets:5   UAUUCACCUCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1121 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008677341.2	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   *|*|*||||||||||||||||*|| targets:2912   CAAUCAUCUCAAUCCACAUGUAUU   2935 Target Full Sequence	1.5	PREDICTED: Zea mays cation/H(+) antiporter 15 (LOC103651657), mRNA	NA	coding protein	psRNATarget
XM_020550625.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   *|*|*||||||||||||||||*|| targets:2896   CAAUCAUCUCAAUCCACAUGUAUU   2919 Target Full Sequence	1.5	PREDICTED: Zea mays cation/H(+) antiporter 15-like (LOC109944899), mRNA	NA	coding protein	psRNATarget
JB163398.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   *||*||*||||||||||||||*|| targets:5   CAUAGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1062 from Patent EP2559767	NA	coding protein	psRNATarget
HI402937.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   *||*||*||||||||||||||*|| targets:5   CAUAGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1062 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235067.1	ncRNA:24   AUAACUAGAGUUAGGUGUACACAA   1   *||*||*||||||||||||||*|| targets:5   CAUAGACCUCAAUCCACAUGUAUU   28 Target Full Sequence	2.5	Sequence 1062 from Patent EP2985353	NA	coding protein	psRNATarget