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BaseInfo

ncRNA ID	novel_zma_miR5076
Species	Zea mays
Class	miRNA
Genome position	Chr8:75383854-75383938 [+]
Reference genome	RefGen_v4
Source	SRR2287164;SRR4237220
Length	21
Mature sequence(if miRNA)	1 - CUCGGAGGGGAUUGAAGGGGC - 21
Stem-loop(if miRNA)	--C             A            - -    -      A    UCGGAGGGGAUUG AGGGGCUAAAAU C CUCU UAUUCA A    ||||||||||||| |||||||||||| | |||| ||||||    GGUCUCCCCUAAC UCUCCGAUUUUA G GAGG AUAAGU U UUA             C            C U    C      U
Stem-loop sequence	CUCGGAGGGGAUUGAAGGGGCUAAAAUCCUCUUAUUCAAAUUUGAAUACGGAGUGCAUUUUAGCCUCUCCAAUCCCCUCUGGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008654495.2	ncRNA:21   CGGGGAAGUUAGGGGAGGCUC   1   |||||||||||||||||||=* targets:1115   GCCCCUUCAAUCCCCUCCGGU   1135 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
LQ237950.1	ncRNA:21   CGGGGAAGUUAGGGGAGGCUC   1   ||||||*=||||||||||||* targets:204   GCCCCUCUAAUCCCCUCCGAU   224 Target Full Sequence	3.0	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
JB166281.1	ncRNA:21   CGGGGAAGUUAGGGGAGGCUC   1   ||||||*=||||||||||||* targets:204   GCCCCUCUAAUCCCCUCCGAU   224 Target Full Sequence	3.0	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
HI405820.1	ncRNA:21   CGGGGAAGUUAGGGGAGGCUC   1   ||||||*=||||||||||||* targets:204   GCCCCUCUAAUCCCCUCCGAU   224 Target Full Sequence	3.0	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
BT065170.1	ncRNA:21   CGGGGAAGUUAGGGGAGGCUC   1   *|||||*||||||||||||=| targets:686   UCCCCUCCAAUCCCCUCCGGG   706 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:21   CGGGGAAGUUAGGGGAGGCUC   1   *|||||*||||||||||||=| targets:1566   UCCCCUCCAAUCCCCUCCGGG   1586 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:21   CGGGGAAGUUAGGGGAGGCUC   1   *|||||*||||||||||||=| targets:1586   UCCCCUCCAAUCCCCUCCGGG   1606 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:21   CGGGGAAGUUAGGGGAGGCUC   1   *|||||*||||||||||||=| targets:1610   UCCCCUCCAAUCCCCUCCGGG   1630 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:21   CGGGGAAGUUAGGGGAGGCUC   1   *|||||*||||||||||||=| targets:1643   UCCCCUCCAAUCCCCUCCGGG   1663 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020551688.1	ncRNA:21   CGGGGAAGUUAGGGGAGGCUC   1   *||||*||||||||||||||* targets:2150   UCCCCCUCAAUCCCCUCCGAU   2170 Target Full Sequence	2.0	PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547043.1	ncRNA:21   CGGGGAAGUUAGGGGAGGCUC   1   *||||*||||||||||||||* targets:3175   UCCCCCUCAAUCCCCUCCGAU   3195 Target Full Sequence	2.0	PREDICTED: Zea mays protein FAR1-RELATED SEQUENCE 6 (LOC103644317), transcript variant X1, mRNA	NA	coding protein	psRNATarget