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BaseInfo

ncRNA ID novel_zma_miR5075
Species Zea mays
Class miRNA
Genome position Chr5:193874605-193874713 [+]
Reference genome RefGen_v4
Source SRR1618882
Length 24
Mature sequence(if miRNA) 86 - CCUCCGGUAUUUGGACUCCCAAAC - 109
Stem-loop(if miRNA) --       -   C  A       C                    U     AUAUU
  UUGGGAG CCA AA ACCGGAG GGACUGGAGUGGCUAAAAUC CCCUC     G
  ||||||| ||| || ||||||| |||||||||||||||||||| |||||
  AACCCUC GGU UU UGGCCUC CCUGACCUCACCGAUUUUAG GGGAG     A
CA       A   -  A       C                    -     GAAUA
Stem-loop sequence UUGGGAGCCACAAAACCGGAGCGGACUGGAGUGGCUAAAAUCUCCCUCAUAUUGAAUAAGGAGGGGAUUUUAGCCACUCCAGUCCCCUCCGGUAUUUGGACUCCCAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008669125.2
ncRNA:24   CAAACCCUCAGGUUUAUGGCCUCC   1
  |||||*||||||||||||||*|||
targets:31   GUUUGAGAGUCCAAAUACCGAAGG   54

2.5 PREDICTED: Zea mays Disease resistance protein RPS2 (LOC100216844), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008669124.2
ncRNA:24   CAAACCCUCAGGUUUAUGGCCUCC   1
  |||||*||||||||||||||*|||
targets:31   GUUUGAGAGUCCAAAUACCGAAGG   54

2.5 PREDICTED: Zea mays Disease resistance protein RPS2 (LOC100216844), transcript variant X1, mRNA NA coding protein psRNATarget